Ciclev10013802m.g (Citrus clementina)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Ciclev10013802m.g T257886_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10013802m MADS box 17 64

Links

Other MADS box family TFs
Other Citrus clementina TFs

184 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
orange1.1g045481m.g Citrus sinensis orange1.1g045481m.g N 1.000
Ciclev10030387m.g Citrus clementina Ciclev10030387m.g N 0.917
orange1.1g036705m.g Citrus sinensis orange1.1g036705m.g N 0.917
POPTR_0008s04110 Populus trichocarpa POPTR_0008s04110 N 0.875
POPTR_0009s08740 Populus trichocarpa POPTR_0009s08740 N 0.875
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.875
MDP0000168914 Malus domestica MDP0000168914 N 0.854
MTR_3g080940 Medicago truncatula MTR_3g080940 N 0.833
TCM_040735 Theobroma cacao TCM_040735 N 0.833
29613.m000367 Ricinus communis 29613.m000367 N 0.833
30099.m001671 Ricinus communis 30099.m001671 N 0.833
Eucgr.H04834 Eucalyptus grandis Eucgr.H04834 N 0.833
SapurV1A.0019s0700 Salix purpurea SapurV1A.0019s0700 N 0.833
SapurV1A.1128s0080 Salix purpurea SapurV1A.1128s0080 N 0.833
GLYMA10G40060 Glycine max GLYMA10G40060 N 0.812
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.812
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.812
Ca_07607 Cicer arietinum Ca_07607 N 0.812
Ca_26354 Cicer arietinum Ca_26354 N 0.812
Pm021070 Prunus mume Pm021070 N 0.812
cassava41915.m1 Manihot esculenta cassava41915.m1 N 0.812
chr1.CM0088.830.nc Lotus japonicus chr1.CM0088.830.nc N 0.812
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.812
PGSC0003DMG400044387 Solanum tuberosum PGSC0003DMG400044387 N 0.792
Solyc01g106710.1 Solanum lycopersicum Solyc01g106710.1 N 0.792
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.792
mgf018529m Mimulus guttatus mgf018529m N 0.792
mgf024307m Mimulus guttatus mgf024307m N 0.792
evm.TU.contig_24748.5 Carica papaya evm.TU.contig_24748.5 N 0.792
evm.TU.contig_27553.3 Carica papaya evm.TU.contig_27553.3 N 0.792
evm.TU.supercontig_347.2 Carica papaya evm.TU.supercontig_347.2 N 0.792
evm.TU.supercontig_758.1 Carica papaya evm.TU.supercontig_758.1 N 0.792
LjSGA_042140.1 Lotus japonicus LjSGA_042140.1 N 0.792
PGSC0003DMG400043633 Solanum tuberosum PGSC0003DMG400043633 N 0.771
cassava8711.m1 Manihot esculenta cassava8711.m1 N 0.771
Eucgr.I02506 Eucalyptus grandis Eucgr.I02506 N 0.771
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.771
evm.TU.contig_37082 Carica papaya evm.TU.contig_37082 N 0.771
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.771
evm.TU.supercontig_347.10 Carica papaya evm.TU.supercontig_347.10 N 0.771
evm.TU.supercontig_505.5 Carica papaya evm.TU.supercontig_505.5 N 0.771
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.771
evm.TU.supercontig_654.5 Carica papaya evm.TU.supercontig_654.5 N 0.771
gene01788-v1.0-hybrid Fragaria vesca gene01788-v1.0-hybrid I 0.771
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.771
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.771
Lus10030824.g Linum usitatissimum Lus10030824.g N 0.771
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.771
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.750
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.750
PRUPE_ppa023670mg Prunus persica PRUPE_ppa023670mg N 0.750
VIT_03s0088g00610 Vitis vinifera VIT_03s0088g00610 N 0.750
Pm016629 Prunus mume Pm016629 N 0.750
30099.m001672 Ricinus communis 30099.m001672 N 0.750
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.750
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.750
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.750
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.750
evm.TU.contig_33091.3 Carica papaya evm.TU.contig_33091.3 N 0.750
evm.TU.contig_35157.2 Carica papaya evm.TU.contig_35157.2 N 0.750
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.750
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.750
evm.TU.contig_38155.1 Carica papaya evm.TU.contig_38155.1 N 0.750
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.750
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.750
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.750
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.750
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.750
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.750
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.750
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.750
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.750
evm.TU.supercontig_851.1 Carica papaya evm.TU.supercontig_851.1 N 0.750
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.750
Lus10030663.g Linum usitatissimum Lus10030663.g N 0.750
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.750
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.750
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.750
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.750
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.750
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N 0.750
LjSGA_025167.1 Lotus japonicus LjSGA_025167.1 N 0.750
evm.TU.contig_27553.5 Carica papaya evm.TU.contig_27553.5 N 0.745
evm.TU.contig_47064.2 Carica papaya evm.TU.contig_47064.2 N 0.745
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.729
AGL61 Arabidopsis thaliana AT2G24840 N 0.729
Bra022434 Brassica rapa Bra022434 N 0.729
Bra026764 Brassica rapa Bra026764 N 0.729
GLYMA20G27320 Glycine max GLYMA20G27320 N 0.729
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.729
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.729
MTR_2g030740 Medicago truncatula MTR_2g030740 N 0.729
PGSC0003DMG400039595 Solanum tuberosum PGSC0003DMG400039595 N 0.729
PRUPE_ppa022494mg Prunus persica PRUPE_ppa022494mg N 0.729
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.729
TCM_006323 Theobroma cacao TCM_006323 N 0.729
TCM_006324 Theobroma cacao TCM_006324 N 0.729
Cla006571 Citrullus lanatus Cla006571 N 0.729
Pm021017 Prunus mume Pm021017 N 0.729
29838.m001672 Ricinus communis 29838.m001672 N 0.729
cassava21573.m1 Manihot esculenta cassava21573.m1 N 0.729
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.729
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.729
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.729
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.729
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.729
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.729
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.729
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N 0.729
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.729
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.729
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.729
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.729
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.729
evm.TU.contig_43014 Carica papaya evm.TU.contig_43014 N 0.729
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.729
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.729
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.729
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.729
evm.TU.supercontig_348.9 Carica papaya evm.TU.supercontig_348.9 N 0.729
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N 0.729
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.729
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.729
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.729
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.729
evm.TU.supercontig_695.8 Carica papaya evm.TU.supercontig_695.8 N 0.729
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.729
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.729
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.729
SapurV1A.0808s0160 Salix purpurea SapurV1A.0808s0160 N 0.729
MTR_1g108500 Medicago truncatula MTR_1g108500 N 0.727
PGSC0003DMG400034832 Solanum tuberosum PGSC0003DMG400034832 N 0.714
AGL23 Arabidopsis thaliana AT1G65360 N 0.708
Bo1g112460 Brassica oleracea Bo1g112460 N 0.708
Bo5g113750 Brassica oleracea Bo5g113750 N 0.708
Bo8g099550 Brassica oleracea Bo8g099550 N 0.708
Bra007829 Brassica rapa Bra007829 N 0.708
GLYMA10G10840 Glycine max GLYMA10G10840 N 0.708
GLYMA10G10860 Glycine max GLYMA10G10860 N 0.708
GLYMA10G10930 Glycine max GLYMA10G10930 N 0.708
GLYMA10G11450 Glycine max GLYMA10G11450 N 0.708
GLYMA10G40080 Glycine max GLYMA10G40080 N 0.708
GLYMA13G39016 Glycine max GLYMA13G39016 N 0.708
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.708
MTR_1g012570 Medicago truncatula MTR_1g012570 N 0.708
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.708
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.708
MTR_1g108510 Medicago truncatula MTR_1g108510 N 0.708
MTR_2g085250 Medicago truncatula MTR_2g085250 N 0.708
MTR_2g085280 Medicago truncatula MTR_2g085280 N 0.708
MTR_3g030770 Medicago truncatula MTR_3g030770 N 0.708
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.708
MTR_5g055100 Medicago truncatula MTR_5g055100 N 0.708
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.708
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.708
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.708
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.708
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.708
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.708
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.708
Ca_04661 Cicer arietinum Ca_04661 N 0.708
mgf021403m Mimulus guttatus mgf021403m N 0.708
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.708
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.708
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.708
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.708
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.708
evm.TU.contig_31285.2 Carica papaya evm.TU.contig_31285.2 N 0.708
evm.TU.contig_34259 Carica papaya evm.TU.contig_34259 N 0.708
evm.TU.contig_38329 Carica papaya evm.TU.contig_38329 N 0.708
evm.TU.contig_41894.2 Carica papaya evm.TU.contig_41894.2 N 0.708
evm.TU.supercontig_1259.1 Carica papaya evm.TU.supercontig_1259.1 N 0.708
evm.TU.supercontig_347.13 Carica papaya evm.TU.supercontig_347.13 N 0.708
evm.TU.supercontig_347.8 Carica papaya evm.TU.supercontig_347.8 N 0.708
evm.TU.supercontig_348.1 Carica papaya evm.TU.supercontig_348.1 N 0.708
evm.TU.supercontig_625.2 Carica papaya evm.TU.supercontig_625.2 N 0.708
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.708
MDP0000221590 Malus domestica MDP0000221590 N 0.708
Thhalv10027307m.g Eutrema salsugineum Thhalv10027307m.g N 0.708
chr2.CM0250.170.nc Lotus japonicus chr2.CM0250.170.nc N 0.708
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.708
evm.TU.contig_31965.2 Carica papaya evm.TU.contig_31965.2 N 0.702
evm.TU.contig_38122.1 Carica papaya evm.TU.contig_38122.1 N 0.702
evm.TU.supercontig_2423.2 Carica papaya evm.TU.supercontig_2423.2 N 0.702