Carubv10024914m.g (Capsella rubella)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Carubv10024914m.g T257826_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10024914m MADS box 18 65

Links

Other MADS box family TFs
Other Capsella rubella TFs

244 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 1.000
AGL61 Arabidopsis thaliana AT2G24840 N 1.000
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 1.000
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.979
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.979
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.979
Bo8g099550 Brassica oleracea Bo8g099550 N 0.958
Bra007829 Brassica rapa Bra007829 N 0.958
Bra032057 Brassica rapa Bra032057 N 0.938
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.938
Bo4g157220 Brassica oleracea Bo4g157220 N 0.917
Bra026764 Brassica rapa Bra026764 N 0.896
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.875
29613.m000367 Ricinus communis 29613.m000367 N 0.854
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.833
Pm021070 Prunus mume Pm021070 N 0.833
chr1.CM0088.830.nc Lotus japonicus chr1.CM0088.830.nc N 0.833
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.812
MTR_3g080940 Medicago truncatula MTR_3g080940 N 0.812
TCM_006323 Theobroma cacao TCM_006323 N 0.812
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.812
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.812
Ca_07607 Cicer arietinum Ca_07607 N 0.812
Ca_26354 Cicer arietinum Ca_26354 N 0.812
Cla006571 Citrullus lanatus Cla006571 N 0.812
30099.m001671 Ricinus communis 30099.m001671 N 0.812
cassava41915.m1 Manihot esculenta cassava41915.m1 N 0.812
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.812
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.812
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.812
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.812
Eucgr.H04834 Eucalyptus grandis Eucgr.H04834 N 0.812
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.812
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.812
Lus10030824.g Linum usitatissimum Lus10030824.g N 0.812
MDP0000168914 Malus domestica MDP0000168914 N 0.812
SapurV1A.0019s0700 Salix purpurea SapurV1A.0019s0700 N 0.812
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.812
Bo5g113750 Brassica oleracea Bo5g113750 N 0.792
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.792
PGSC0003DMG400044387 Solanum tuberosum PGSC0003DMG400044387 N 0.792
POPTR_0008s04110 Populus trichocarpa POPTR_0008s04110 N 0.792
POPTR_0009s08740 Populus trichocarpa POPTR_0009s08740 N 0.792
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.792
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.792
Solyc01g106710.1 Solanum lycopersicum Solyc01g106710.1 N 0.792
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.792
TCM_006325 Theobroma cacao TCM_006325 N 0.792
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.792
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.792
Pm021018 Prunus mume Pm021018 N 0.792
29838.m001672 Ricinus communis 29838.m001672 N 0.792
30099.m001672 Ricinus communis 30099.m001672 N 0.792
mgf018529m Mimulus guttatus mgf018529m N 0.792
mgf024307m Mimulus guttatus mgf024307m N 0.792
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.792
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.792
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.792
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.792
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.792
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.792
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.792
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.792
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.792
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.792
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.792
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.792
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.792
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.792
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.792
Lus10030663.g Linum usitatissimum Lus10030663.g N 0.792
MDP0000434703 Malus domestica MDP0000434703 I 0.792
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.792
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.792
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.792
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.792
LjSGA_042140.1 Lotus japonicus LjSGA_042140.1 N 0.792
AGL62 Arabidopsis thaliana AT5G60440 I 0.771
Bo1g112460 Brassica oleracea Bo1g112460 N 0.771
Bra022434 Brassica rapa Bra022434 N 0.771
fgenesh1_pm.C_scaffold_7000337 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000337 N 0.771
GLYMA10G40060 Glycine max GLYMA10G40060 N 0.771
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.771
PRUPE_ppa023670mg Prunus persica PRUPE_ppa023670mg N 0.771
PRUPE_ppa024816mg Prunus persica PRUPE_ppa024816mg I 0.771
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.771
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.771
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.771
Pm016629 Prunus mume Pm016629 N 0.771
Pm021071 Prunus mume Pm021071 N 0.771
Pm030655 Prunus mume Pm030655 I 0.771
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.771
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.771
cassava8711.m1 Manihot esculenta cassava8711.m1 N 0.771
Aquca_015_00242 Aquilegia coerulea Aquca_015_00242 N 0.771
Aquca_015_00243 Aquilegia coerulea Aquca_015_00243 N 0.771
Aquca_054_00126 Aquilegia coerulea Aquca_054_00126 N 0.771
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.771
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.771
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N 0.771
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.771
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.771
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.771
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.771
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.771
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.771
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.771
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.771
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N 0.771
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.771
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.771
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.771
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.771
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.771
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.771
gene01788-v1.0-hybrid Fragaria vesca gene01788-v1.0-hybrid I 0.771
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.771
Gorai.012G163200 Gossypium raimondii Gorai.012G163200 N 0.771
Gorai.N026300 Gossypium raimondii Gorai.N026300 N 0.771
MDP0000221590 Malus domestica MDP0000221590 N 0.771
MDP0000233925 Malus domestica MDP0000233925 N 0.771
MDP0000278770 Malus domestica MDP0000278770 N 0.771
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.771
chr5.LjT25B19.190.nd Lotus japonicus chr5.LjT25B19.190.nd N 0.771
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.771
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.763
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.750
Al_scaffold_0002_1221 Arabidopsis lyrata Al_scaffold_0002_1221 N 0.750
AGL23 Arabidopsis thaliana AT1G65360 N 0.750
AT4G36590 Arabidopsis thaliana AT4G36590 N 0.750
Bo4g165540 Brassica oleracea Bo4g165540 N 0.750
Bra038225 Brassica rapa Bra038225 N 0.750
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.750
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.750
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.750
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.750
PGSC0003DMG400036006 Solanum tuberosum PGSC0003DMG400036006 N 0.750
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.750
PGSC0003DMG400043633 Solanum tuberosum PGSC0003DMG400043633 N 0.750
POPTR_0007s03430 Populus trichocarpa POPTR_0007s03430 N 0.750
scaffold_302326.1 Arabidopsis lyrata scaffold_302326.1 I 0.750
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.750
TCM_040735 Theobroma cacao TCM_040735 N 0.750
VIT_03s0088g00610 Vitis vinifera VIT_03s0088g00610 N 0.750
Ca_04659 Cicer arietinum Ca_04659 N 0.750
Ca_04660 Cicer arietinum Ca_04660 N 0.750
cassava21573.m1 Manihot esculenta cassava21573.m1 N 0.750
Aquca_040_00096 Aquilegia coerulea Aquca_040_00096 N 0.750
Ciclev10030387m.g Citrus clementina Ciclev10030387m.g N 0.750
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.750
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.750
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.750
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.750
evm.TU.supercontig_347.8 Carica papaya evm.TU.supercontig_347.8 N 0.750
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.750
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.750
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.750
orange1.1g036705m.g Citrus sinensis orange1.1g036705m.g N 0.750
Thhalv10027307m.g Eutrema salsugineum Thhalv10027307m.g N 0.750
AGL28 Arabidopsis thaliana AT1G01530 N 0.729
F775_04223 Aegilops tauschii F775_04223 I 0.729
GLYMA20G27320 Glycine max GLYMA20G27320 N 0.729
GSMUA_Achr5G26530_001 Musa acuminata GSMUA_Achr5G26530_001 I 0.729
GSMUA_Achr8G07230_001 Musa acuminata GSMUA_Achr8G07230_001 I 0.729
MTR_2g030740 Medicago truncatula MTR_2g030740 N 0.729
MTR_2g085250 Medicago truncatula MTR_2g085250 N 0.729
MTR_2g085280 Medicago truncatula MTR_2g085280 N 0.729
MTR_5g055100 Medicago truncatula MTR_5g055100 N 0.729
PGSC0003DMG400036160 Solanum tuberosum PGSC0003DMG400036160 N 0.729
PGSC0003DMG400040127 Solanum tuberosum PGSC0003DMG400040127 N 0.729
PGSC0003DMG400045239 Solanum tuberosum PGSC0003DMG400045239 N 0.729
PRUPE_ppa022494mg Prunus persica PRUPE_ppa022494mg N 0.729
TRAES3BF106100060CFD_g Triticum aestivum TRAES3BF106100060CFD_g I 0.729
Ca_04661 Cicer arietinum Ca_04661 N 0.729
Ca_04665 Cicer arietinum Ca_04665 N 0.729
Pm021017 Prunus mume Pm021017 N 0.729
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.729
Ciclev10013802m.g Citrus clementina Ciclev10013802m.g N 0.729
Eucgr.G01185 Eucalyptus grandis Eucgr.G01185 N 0.729
evm.TU.contig_27553.5 Carica papaya evm.TU.contig_27553.5 N 0.729
evm.TU.contig_35157.1 Carica papaya evm.TU.contig_35157.1 N 0.729
evm.TU.contig_43014 Carica papaya evm.TU.contig_43014 N 0.729
evm.TU.contig_47064.2 Carica papaya evm.TU.contig_47064.2 N 0.729
evm.TU.supercontig_1259.1 Carica papaya evm.TU.supercontig_1259.1 N 0.729
evm.TU.supercontig_505.6 Carica papaya evm.TU.supercontig_505.6 N 0.729
evm.TU.supercontig_851.1 Carica papaya evm.TU.supercontig_851.1 N 0.729
orange1.1g045481m.g Citrus sinensis orange1.1g045481m.g N 0.729
SapurV1A.0808s0160 Salix purpurea SapurV1A.0808s0160 N 0.729
SapurV1A.1128s0080 Salix purpurea SapurV1A.1128s0080 N 0.729
Thhalv10000432m.g Eutrema salsugineum Thhalv10000432m.g N 0.729
Thhalv10015908m.g Eutrema salsugineum Thhalv10015908m.g N 0.729
Thhalv10017754m.g Eutrema salsugineum Thhalv10017754m.g N 0.729
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N 0.729
Bra002480 Brassica rapa Bra002480 N 0.708
Bra035685 Brassica rapa Bra035685 N 0.708
GLYMA17G01771 Glycine max GLYMA17G01771 N 0.708
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.708
GLYMA20G27341 Glycine max GLYMA20G27341 N 0.708
GLYMA20G27361 Glycine max GLYMA20G27361 N 0.708
MTR_1g012570 Medicago truncatula MTR_1g012570 N 0.708
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.708
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.708
MTR_1g108510 Medicago truncatula MTR_1g108510 N 0.708
MTR_2g093190 Medicago truncatula MTR_2g093190 N 0.708
MTR_3g030770 Medicago truncatula MTR_3g030770 N 0.708
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.708
MTR_5g045560 Medicago truncatula MTR_5g045560 N 0.708
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.708
SELMODRAFT_450772 Selaginella moellendorffii SELMODRAFT_450772 N 0.708
SELMODRAFT_450775 Selaginella moellendorffii SELMODRAFT_450775 N 0.708
SELMODRAFT_450776 Selaginella moellendorffii SELMODRAFT_450776 N 0.708
SELMODRAFT_450777 Selaginella moellendorffii SELMODRAFT_450777 N 0.708
TCM_006324 Theobroma cacao TCM_006324 N 0.708
TCM_029518 Theobroma cacao TCM_029518 I 0.708
Ca_04662 Cicer arietinum Ca_04662 N 0.708
Cla009921 Citrullus lanatus Cla009921 N 0.708
Cla010744 Citrullus lanatus Cla010744 N 0.708
29693.m002039 Ricinus communis 29693.m002039 I 0.708
29693.m002042 Ricinus communis 29693.m002042 N 0.708
Cucsa.047600 Cucumis sativus Cucsa.047600 N 0.708
Cucsa.342610 Cucumis sativus Cucsa.342610 N 0.708
mgf021403m Mimulus guttatus mgf021403m N 0.708
mgf022147m Mimulus guttatus mgf022147m N 0.708
mgf022625m Mimulus guttatus mgf022625m N 0.708
mgf023207m Mimulus guttatus mgf023207m N 0.708
Ciclev10006503m.g Citrus clementina Ciclev10006503m.g N 0.708
Ciclev10006958m.g Citrus clementina Ciclev10006958m.g N 0.708
Ciclev10007104m.g Citrus clementina Ciclev10007104m.g N 0.708
Eucgr.I02506 Eucalyptus grandis Eucgr.I02506 N 0.708
evm.TU.contig_24748.5 Carica papaya evm.TU.contig_24748.5 N 0.708
evm.TU.contig_27553.3 Carica papaya evm.TU.contig_27553.3 N 0.708
evm.TU.contig_31285.2 Carica papaya evm.TU.contig_31285.2 N 0.708
evm.TU.contig_34259 Carica papaya evm.TU.contig_34259 N 0.708
evm.TU.contig_38329 Carica papaya evm.TU.contig_38329 N 0.708
evm.TU.contig_41894.2 Carica papaya evm.TU.contig_41894.2 N 0.708
evm.TU.supercontig_20.85 Carica papaya evm.TU.supercontig_20.85 N 0.708
evm.TU.supercontig_347.10 Carica papaya evm.TU.supercontig_347.10 N 0.708
evm.TU.supercontig_347.13 Carica papaya evm.TU.supercontig_347.13 N 0.708
evm.TU.supercontig_347.2 Carica papaya evm.TU.supercontig_347.2 N 0.708
evm.TU.supercontig_439.1 Carica papaya evm.TU.supercontig_439.1 N 0.708
evm.TU.supercontig_758.1 Carica papaya evm.TU.supercontig_758.1 N 0.708
MDP0000274606 Malus domestica MDP0000274606 N 0.708
LjSGA_025167.1 Lotus japonicus LjSGA_025167.1 N 0.708
POPTR_0016s12650 Populus trichocarpa POPTR_0016s12650 N 0.702