PGSC0003DMG400036006 (Solanum tuberosum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 PGSC0003DMG400036006 T255669_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400086435 MADS box 16 62

Links

Other MADS box family TFs
Other Solanum tuberosum TFs

126 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG400036160 Solanum tuberosum PGSC0003DMG400036160 N 0.854
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.854
PGSC0003DMG400045239 Solanum tuberosum PGSC0003DMG400045239 N 0.812
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.809
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.787
PGSC0003DMG400040127 Solanum tuberosum PGSC0003DMG400040127 N 0.766
TCM_006323 Theobroma cacao TCM_006323 N 0.766
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.766
29613.m000367 Ricinus communis 29613.m000367 N 0.766
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.766
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.766
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.750
AGL61 Arabidopsis thaliana AT2G24840 N 0.750
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.750
PGSC0003DMG400035221 Solanum tuberosum PGSC0003DMG400035221 N 0.750
PGSC0003DMG400044513 Solanum tuberosum PGSC0003DMG400044513 N 0.750
Solyc04g047870.1 Solanum lycopersicum Solyc04g047870.1 N 0.750
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.750
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.750
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.750
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.750
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.750
Al_scaffold_0002_1221 Arabidopsis lyrata Al_scaffold_0002_1221 N 0.745
MTR_3g080940 Medicago truncatula MTR_3g080940 N 0.745
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.745
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.745
Pm021070 Prunus mume Pm021070 N 0.745
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.745
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.745
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.745
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.745
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.745
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.745
AGL62 Arabidopsis thaliana AT5G60440 I 0.729
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.729
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.729
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.729
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.729
Ca_07607 Cicer arietinum Ca_07607 N 0.729
Ca_26354 Cicer arietinum Ca_26354 N 0.729
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.729
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.729
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.729
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.729
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.729
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.729
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.729
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.729
Lus10030824.g Linum usitatissimum Lus10030824.g N 0.729
SapurV1A.0019s0700 Salix purpurea SapurV1A.0019s0700 N 0.729
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.729
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.723
Bo5g113750 Brassica oleracea Bo5g113750 N 0.723
Bo8g099550 Brassica oleracea Bo8g099550 N 0.723
Bra002480 Brassica rapa Bra002480 N 0.723
Bra007829 Brassica rapa Bra007829 N 0.723
PGSC0003DMG400040625 Solanum tuberosum PGSC0003DMG400040625 N 0.723
POPTR_0009s08740 Populus trichocarpa POPTR_0009s08740 N 0.723
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.723
30099.m001671 Ricinus communis 30099.m001671 N 0.723
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.723
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.723
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.723
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.723
evm.TU.supercontig_2423.2 Carica papaya evm.TU.supercontig_2423.2 N 0.723
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.723
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.723
Lus10030663.g Linum usitatissimum Lus10030663.g N 0.723
MDP0000168914 Malus domestica MDP0000168914 N 0.723
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.723
Thhalv10027307m.g Eutrema salsugineum Thhalv10027307m.g N 0.723
chr5.LjT25B19.190.nd Lotus japonicus chr5.LjT25B19.190.nd N 0.723
PGSC0003DMG400034832 Solanum tuberosum PGSC0003DMG400034832 N 0.714
Bo1g112460 Brassica oleracea Bo1g112460 N 0.708
fgenesh1_pm.C_scaffold_7000337 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000337 N 0.708
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.708
PRUPE_ppa023670mg Prunus persica PRUPE_ppa023670mg N 0.708
Cla006571 Citrullus lanatus Cla006571 N 0.708
Pm016629 Prunus mume Pm016629 N 0.708
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.708
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.708
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.708
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.708
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.708
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.708
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.708
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.708
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.708
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.708
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.708
chr1.CM0088.830.nc Lotus japonicus chr1.CM0088.830.nc N 0.708
LjSGA_042140.1 Lotus japonicus LjSGA_042140.1 N 0.708
AGL28 Arabidopsis thaliana AT1G01530 N 0.702
AT4G36590 Arabidopsis thaliana AT4G36590 N 0.702
Bo9g142570 Brassica oleracea Bo9g142570 N 0.702
Bra022434 Brassica rapa Bra022434 N 0.702
Bra032057 Brassica rapa Bra032057 N 0.702
Bra038225 Brassica rapa Bra038225 N 0.702
MTR_2g030740 Medicago truncatula MTR_2g030740 N 0.702
MTR_5g055100 Medicago truncatula MTR_5g055100 N 0.702
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.702
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.702
TCM_040735 Theobroma cacao TCM_040735 N 0.702
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.702
VIT_03s0088g00610 Vitis vinifera VIT_03s0088g00610 N 0.702
Ca_04659 Cicer arietinum Ca_04659 N 0.702
Ca_04660 Cicer arietinum Ca_04660 N 0.702
Pm021071 Prunus mume Pm021071 N 0.702
30099.m001672 Ricinus communis 30099.m001672 N 0.702
cassava41915.m1 Manihot esculenta cassava41915.m1 N 0.702
mgf022147m Mimulus guttatus mgf022147m N 0.702
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.702
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.702
evm.TU.contig_27553.5 Carica papaya evm.TU.contig_27553.5 N 0.702
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N 0.702
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.702
evm.TU.contig_38122.1 Carica papaya evm.TU.contig_38122.1 N 0.702
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.702
evm.TU.contig_43014 Carica papaya evm.TU.contig_43014 N 0.702
evm.TU.contig_47064.2 Carica papaya evm.TU.contig_47064.2 N 0.702
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N 0.702
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.702
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.702
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.702
Thhalv10017754m.g Eutrema salsugineum Thhalv10017754m.g N 0.702
PGSC0003DMG400045423 Solanum tuberosum PGSC0003DMG400045423 N 0.700