AGL62 (Arabidopsis lyrata)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 fgenesh1_pg.C_scaffold_8002041 T254005_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_8002041 MADS box 15 62

Links

Other MADS box family TFs
Other Arabidopsis lyrata TFs

271 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGL62 Arabidopsis thaliana AT5G60440 I 0.979
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.979
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.979
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.979
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.938
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.938
TCM_006323 Theobroma cacao TCM_006323 N 0.938
Cla006571 Citrullus lanatus Cla006571 N 0.938
Pm021071 Prunus mume Pm021071 N 0.938
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.938
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.938
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.938
Bo1g112460 Brassica oleracea Bo1g112460 N 0.917
Ca_04665 Cicer arietinum Ca_04665 N 0.917
30099.m001672 Ricinus communis 30099.m001672 N 0.917
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.917
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.917
MDP0000434703 Malus domestica MDP0000434703 I 0.917
Bra002480 Brassica rapa Bra002480 N 0.896
Bra038225 Brassica rapa Bra038225 N 0.896
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.896
GLYMA20G27341 Glycine max GLYMA20G27341 N 0.896
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.896
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.896
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.896
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.896
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.896
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.896
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.896
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.896
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.896
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.896
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.896
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.896
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.896
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.896
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.896
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.896
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.896
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.896
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.896
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.896
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.896
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.896
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.896
MDP0000233925 Malus domestica MDP0000233925 N 0.896
MDP0000278770 Malus domestica MDP0000278770 N 0.896
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.896
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.896
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.896
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.875
Bo5g113750 Brassica oleracea Bo5g113750 N 0.875
Bo9g142570 Brassica oleracea Bo9g142570 N 0.875
fgenesh1_pm.C_scaffold_7000337 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000337 N 0.875
GLYMA20G27320 Glycine max GLYMA20G27320 N 0.875
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.875
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.875
MTR_1g108510 Medicago truncatula MTR_1g108510 N 0.875
MTR_3g030770 Medicago truncatula MTR_3g030770 N 0.875
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.875
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.875
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.875
Ca_04659 Cicer arietinum Ca_04659 N 0.875
Ca_04660 Cicer arietinum Ca_04660 N 0.875
Pm021018 Prunus mume Pm021018 N 0.875
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.875
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.875
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.875
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.875
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.875
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.875
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.875
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.875
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.875
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.875
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.875
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.875
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.875
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.875
Thhalv10015908m.g Eutrema salsugineum Thhalv10015908m.g N 0.875
chr2.CM0904.120.nd Lotus japonicus chr2.CM0904.120.nd N 0.875
Al_scaffold_0002_1221 Arabidopsis lyrata Al_scaffold_0002_1221 N 0.854
AT4G36590 Arabidopsis thaliana AT4G36590 N 0.854
Bra022434 Brassica rapa Bra022434 N 0.854
GLYMA10G40070 Glycine max GLYMA10G40070 N 0.854
GLYMA10G40080 Glycine max GLYMA10G40080 N 0.854
GLYMA13G39016 Glycine max GLYMA13G39016 N 0.854
MTR_1g012570 Medicago truncatula MTR_1g012570 N 0.854
MTR_1g105905 Medicago truncatula MTR_1g105905 N 0.854
MTR_2g030740 Medicago truncatula MTR_2g030740 N 0.854
MTR_2g085250 Medicago truncatula MTR_2g085250 N 0.854
MTR_2g085280 Medicago truncatula MTR_2g085280 N 0.854
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.854
MTR_5g045560 Medicago truncatula MTR_5g045560 N 0.854
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.854
scaffold_302326.1 Arabidopsis lyrata scaffold_302326.1 I 0.854
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.854
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.854
Ca_04662 Cicer arietinum Ca_04662 N 0.854
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.854
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N 0.854
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.854
evm.TU.supercontig_347.8 Carica papaya evm.TU.supercontig_347.8 N 0.854
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.854
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N 0.854
evm.TU.supercontig_505.6 Carica papaya evm.TU.supercontig_505.6 N 0.854
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.854
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.854
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N 0.854
AGL28 Arabidopsis thaliana AT1G01530 N 0.833
MTR_2g093190 Medicago truncatula MTR_2g093190 N 0.833
MTR_5g055100 Medicago truncatula MTR_5g055100 N 0.833
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.833
POPTR_0007s03430 Populus trichocarpa POPTR_0007s03430 N 0.833
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.833
Ca_04661 Cicer arietinum Ca_04661 N 0.833
Cagra.1968s0094 Capsella grandiflora Cagra.1968s0094 N 0.833
Carubv10010156m.g Capsella rubella Carubv10010156m.g N 0.833
Eucgr.I02506 Eucalyptus grandis Eucgr.I02506 N 0.833
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.833
evm.TU.contig_35157.1 Carica papaya evm.TU.contig_35157.1 N 0.833
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.833
evm.TU.supercontig_1259.1 Carica papaya evm.TU.supercontig_1259.1 N 0.833
evm.TU.supercontig_851.1 Carica papaya evm.TU.supercontig_851.1 N 0.833
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.833
MDP0000221590 Malus domestica MDP0000221590 N 0.833
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.816
Bo4g165540 Brassica oleracea Bo4g165540 N 0.812
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.812
MTR_3g080940 Medicago truncatula MTR_3g080940 N 0.812
PGSC0003DMG400036160 Solanum tuberosum PGSC0003DMG400036160 N 0.812
PGSC0003DMG400044387 Solanum tuberosum PGSC0003DMG400044387 N 0.812
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.812
Solyc01g106710.1 Solanum lycopersicum Solyc01g106710.1 N 0.812
Ca_07607 Cicer arietinum Ca_07607 N 0.812
Ca_26354 Cicer arietinum Ca_26354 N 0.812
Pm021070 Prunus mume Pm021070 N 0.812
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.812
evm.TU.contig_38604 Carica papaya evm.TU.contig_38604 N 0.812
evm.TU.supercontig_439.1 Carica papaya evm.TU.supercontig_439.1 N 0.812
evm.TU.supercontig_54.67 Carica papaya evm.TU.supercontig_54.67 N 0.812
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.812
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.812
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.812
Thhalv10027307m.g Eutrema salsugineum Thhalv10027307m.g N 0.812
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.812
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.792
AGL61 Arabidopsis thaliana AT2G24840 N 0.792
MTR_1g108580 Medicago truncatula MTR_1g108580 N 0.792
MTR_5g053390 Medicago truncatula MTR_5g053390 N 0.792
PGSC0003DMG400035221 Solanum tuberosum PGSC0003DMG400035221 N 0.792
PGSC0003DMG400040127 Solanum tuberosum PGSC0003DMG400040127 N 0.792
PRUPE_ppa023670mg Prunus persica PRUPE_ppa023670mg N 0.792
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.792
VIT_03s0088g00610 Vitis vinifera VIT_03s0088g00610 N 0.792
Pm016629 Prunus mume Pm016629 N 0.792
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.792
mgf018529m Mimulus guttatus mgf018529m N 0.792
mgf022147m Mimulus guttatus mgf022147m N 0.792
mgf022790m Mimulus guttatus mgf022790m N 0.792
mgf024307m Mimulus guttatus mgf024307m N 0.792
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.792
Cagra.1695s0023 Capsella grandiflora Cagra.1695s0023 N 0.792
Carubv10007644m.g Capsella rubella Carubv10007644m.g N 0.792
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.792
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.792
MDP0000168914 Malus domestica MDP0000168914 N 0.792
SapurV1A.0808s0160 Salix purpurea SapurV1A.0808s0160 N 0.792
Thhalv10017754m.g Eutrema salsugineum Thhalv10017754m.g N 0.792
chr1.CM0088.830.nc Lotus japonicus chr1.CM0088.830.nc N 0.792
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.792
LjSGA_042140.1 Lotus japonicus LjSGA_042140.1 N 0.792
AGL23 Arabidopsis thaliana AT1G65360 N 0.771
Bra035685 Brassica rapa Bra035685 N 0.771
GLYMA10G40060 Glycine max GLYMA10G40060 N 0.771
MTR_0121s0100 Medicago truncatula MTR_0121s0100 N 0.771
MTR_3g067875 Medicago truncatula MTR_3g067875 N 0.771
PGSC0003DMG400043633 Solanum tuberosum PGSC0003DMG400043633 N 0.771
PGSC0003DMG400044513 Solanum tuberosum PGSC0003DMG400044513 N 0.771
PGSC0003DMG400045239 Solanum tuberosum PGSC0003DMG400045239 N 0.771
Solyc04g025050.1 Solanum lycopersicum Solyc04g025050.1 N 0.771
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.771
29613.m000367 Ricinus communis 29613.m000367 N 0.771
cassava8711.m1 Manihot esculenta cassava8711.m1 N 0.771
evm.TU.supercontig_758.1 Carica papaya evm.TU.supercontig_758.1 N 0.771
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.771
Lus10031073.g Linum usitatissimum Lus10031073.g N 0.771
SapurV1A.0019s0700 Salix purpurea SapurV1A.0019s0700 N 0.771
Thhalv10000432m.g Eutrema salsugineum Thhalv10000432m.g N 0.771
Thhalv10003315m.g Eutrema salsugineum Thhalv10003315m.g N 0.771
LjSGA_025167.1 Lotus japonicus LjSGA_025167.1 N 0.771
Bo2g024910 Brassica oleracea Bo2g024910 N 0.750
Bo8g099550 Brassica oleracea Bo8g099550 N 0.750
Bra007829 Brassica rapa Bra007829 N 0.750
Bra020247 Brassica rapa Bra020247 N 0.750
MTR_0121s0080 Medicago truncatula MTR_0121s0080 N 0.750
PGSC0003DMG400036006 Solanum tuberosum PGSC0003DMG400036006 N 0.750
PGSC0003DMG400040625 Solanum tuberosum PGSC0003DMG400040625 N 0.750
POPTR_0009s08740 Populus trichocarpa POPTR_0009s08740 N 0.750
PRUPE_ppa022494mg Prunus persica PRUPE_ppa022494mg N 0.750
TCM_040735 Theobroma cacao TCM_040735 N 0.750
Pm021017 Prunus mume Pm021017 N 0.750
30099.m001671 Ricinus communis 30099.m001671 N 0.750
cassava21573.m1 Manihot esculenta cassava21573.m1 N 0.750
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.750
Aquca_054_00126 Aquilegia coerulea Aquca_054_00126 N 0.750
Eucgr.G01185 Eucalyptus grandis Eucgr.G01185 N 0.750
Eucgr.H04834 Eucalyptus grandis Eucgr.H04834 N 0.750
evm.TU.contig_24748.5 Carica papaya evm.TU.contig_24748.5 N 0.750
evm.TU.contig_27553.3 Carica papaya evm.TU.contig_27553.3 N 0.750
evm.TU.contig_37082 Carica papaya evm.TU.contig_37082 N 0.750
evm.TU.supercontig_347.10 Carica papaya evm.TU.supercontig_347.10 N 0.750
evm.TU.supercontig_347.2 Carica papaya evm.TU.supercontig_347.2 N 0.750
evm.TU.supercontig_505.5 Carica papaya evm.TU.supercontig_505.5 N 0.750
evm.TU.supercontig_654.5 Carica papaya evm.TU.supercontig_654.5 N 0.750
gene01788-v1.0-hybrid Fragaria vesca gene01788-v1.0-hybrid I 0.750
Lus10030663.g Linum usitatissimum Lus10030663.g N 0.750
Lus10035456.g Linum usitatissimum Lus10035456.g N 0.750
evm.TU.contig_41453 Carica papaya evm.TU.contig_41453 N 0.739
Bra011938 Brassica rapa Bra011938 N 0.729
Bra026764 Brassica rapa Bra026764 N 0.729
Bra032057 Brassica rapa Bra032057 N 0.729
GLYMA10G10840 Glycine max GLYMA10G10840 N 0.729
GLYMA10G10860 Glycine max GLYMA10G10860 N 0.729
GLYMA10G10930 Glycine max GLYMA10G10930 N 0.729
Solyc04g047870.1 Solanum lycopersicum Solyc04g047870.1 N 0.729
TCM_029518 Theobroma cacao TCM_029518 I 0.729
29693.m002039 Ricinus communis 29693.m002039 I 0.729
29838.m001672 Ricinus communis 29838.m001672 N 0.729
cassava41915.m1 Manihot esculenta cassava41915.m1 N 0.729
mgf022625m Mimulus guttatus mgf022625m N 0.729
evm.TU.contig_33091.3 Carica papaya evm.TU.contig_33091.3 N 0.729
evm.TU.contig_35157.2 Carica papaya evm.TU.contig_35157.2 N 0.729
evm.TU.supercontig_348.9 Carica papaya evm.TU.supercontig_348.9 N 0.729
Lus10030824.g Linum usitatissimum Lus10030824.g N 0.729
Thhalv10028255m.g Eutrema salsugineum Thhalv10028255m.g N 0.729
chr1.LjB17A22.60.nc Lotus japonicus chr1.LjB17A22.60.nc N 0.729
Bo4g070340 Brassica oleracea Bo4g070340 N 0.723
Bo4g157220 Brassica oleracea Bo4g157220 N 0.708
GLYMA10G10640 Glycine max GLYMA10G10640 N 0.708
GLYMA10G10770 Glycine max GLYMA10G10770 N 0.708
GLYMA10G10900 Glycine max GLYMA10G10900 N 0.708
GLYMA10G11450 Glycine max GLYMA10G11450 N 0.708
MTR_1g075570 Medicago truncatula MTR_1g075570 N 0.708
MTR_1g108500 Medicago truncatula MTR_1g108500 N 0.708
POPTR_0008s04110 Populus trichocarpa POPTR_0008s04110 N 0.708
POPTR_0017s06710 Populus trichocarpa POPTR_0017s06710 N 0.708
POPTR_0017s06800 Populus trichocarpa POPTR_0017s06800 N 0.708
PRUPE_ppa024816mg Prunus persica PRUPE_ppa024816mg I 0.708
Solyc01g060310.1 Solanum lycopersicum Solyc01g060310.1 N 0.708
Solyc04g025110.1 Solanum lycopersicum Solyc04g025110.1 N 0.708
TCM_006324 Theobroma cacao TCM_006324 N 0.708
TCM_006325 Theobroma cacao TCM_006325 N 0.708
Ca_24185 Cicer arietinum Ca_24185 I 0.708
Cla019897 Citrullus lanatus Cla019897 N 0.708
Pm030655 Prunus mume Pm030655 I 0.708
Cucsa.212320 Cucumis sativus Cucsa.212320 N 0.708
Ciclev10017472m.g Citrus clementina Ciclev10017472m.g I 0.708
evm.TU.contig_38155.1 Carica papaya evm.TU.contig_38155.1 N 0.708
evm.TU.supercontig_695.8 Carica papaya evm.TU.supercontig_695.8 N 0.708
gene07364-v1.0-hybrid Fragaria vesca gene07364-v1.0-hybrid N 0.708
Gorai.012G163200 Gossypium raimondii Gorai.012G163200 N 0.708
Gorai.N026300 Gossypium raimondii Gorai.N026300 N 0.708
MDP0000274606 Malus domestica MDP0000274606 N 0.708
orange1.1g037442m.g Citrus sinensis orange1.1g037442m.g I 0.708
chr1.LjB17A22.10.nc Lotus japonicus chr1.LjB17A22.10.nc N 0.708
chr5.LjT25B19.190.nd Lotus japonicus chr5.LjT25B19.190.nd N 0.708
LjSGA_067087.1 Lotus japonicus LjSGA_067087.1 N 0.708
LjSGA_074894.2 Lotus japonicus LjSGA_074894.2 N 0.708
LjT01D09.100.nd Lotus japonicus LjT01D09.100.nd N 0.708
Solyc01g060300.1 Solanum lycopersicum Solyc01g060300.1 N 0.702