MTR_5g045560 (Medicago truncatula)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 MTR_5g045560 T254798_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
AES97117 MADS box 17 64

Links

Other MADS box family TFs
Other Medicago truncatula TFs

233 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MTR_1g012570 Medicago truncatula MTR_1g012570 N 0.979
GLYMA20G27320 Glycine max GLYMA20G27320 N 0.958
MTR_2g085250 Medicago truncatula MTR_2g085250 N 0.958
MTR_2g085280 Medicago truncatula MTR_2g085280 N 0.958
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.938
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.938
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.938
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.938
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.938
MTR_5g053390 Medicago truncatula MTR_5g053390 N 0.938
MTR_5g055100 Medicago truncatula MTR_5g055100 N 0.938
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.938
Ca_04659 Cicer arietinum Ca_04659 N 0.938
Ca_04660 Cicer arietinum Ca_04660 N 0.938
Ca_04665 Cicer arietinum Ca_04665 N 0.938
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.917
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.917
MTR_3g067875 Medicago truncatula MTR_3g067875 N 0.917
GLYMA10G40070 Glycine max GLYMA10G40070 N 0.896
GLYMA20G27341 Glycine max GLYMA20G27341 N 0.896
MTR_1g105905 Medicago truncatula MTR_1g105905 N 0.896
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.896
Ca_04662 Cicer arietinum Ca_04662 N 0.896
Pm021071 Prunus mume Pm021071 N 0.896
Eucgr.I02506 Eucalyptus grandis Eucgr.I02506 N 0.896
AGL62 Arabidopsis thaliana AT5G60440 I 0.875
GLYMA10G40080 Glycine max GLYMA10G40080 N 0.875
MTR_1g108510 Medicago truncatula MTR_1g108510 N 0.875
MTR_2g030740 Medicago truncatula MTR_2g030740 N 0.875
MTR_3g030770 Medicago truncatula MTR_3g030770 N 0.875
Ca_04661 Cicer arietinum Ca_04661 N 0.875
Cla006571 Citrullus lanatus Cla006571 N 0.875
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.875
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.875
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.875
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.875
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.875
MDP0000434703 Malus domestica MDP0000434703 I 0.875
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.875
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.854
GLYMA13G39016 Glycine max GLYMA13G39016 N 0.854
30099.m001672 Ricinus communis 30099.m001672 N 0.854
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.854
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.854
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.854
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.854
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.854
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.854
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.854
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.854
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.854
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.854
MDP0000233925 Malus domestica MDP0000233925 N 0.854
MDP0000278770 Malus domestica MDP0000278770 N 0.854
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.854
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.854
Thhalv10015908m.g Eutrema salsugineum Thhalv10015908m.g N 0.854
AT4G36590 Arabidopsis thaliana AT4G36590 N 0.833
Bo1g112460 Brassica oleracea Bo1g112460 N 0.833
MTR_2g093190 Medicago truncatula MTR_2g093190 N 0.833
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.833
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.833
TCM_006323 Theobroma cacao TCM_006323 N 0.833
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.833
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.833
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.833
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.833
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.833
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.833
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.833
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.833
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.833
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.833
chr2.CM0904.120.nd Lotus japonicus chr2.CM0904.120.nd N 0.833
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N 0.833
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.812
Bo5g113750 Brassica oleracea Bo5g113750 N 0.812
Bo9g142570 Brassica oleracea Bo9g142570 N 0.812
Bra002480 Brassica rapa Bra002480 N 0.812
Bra038225 Brassica rapa Bra038225 N 0.812
fgenesh1_pm.C_scaffold_7000337 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000337 N 0.812
MTR_1g108580 Medicago truncatula MTR_1g108580 N 0.812
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.812
POPTR_0007s03430 Populus trichocarpa POPTR_0007s03430 N 0.812
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.812
scaffold_302326.1 Arabidopsis lyrata scaffold_302326.1 I 0.812
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.812
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.812
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.812
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.812
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.812
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.812
Pm021018 Prunus mume Pm021018 N 0.812
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.812
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.812
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N 0.812
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.812
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.812
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.812
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.812
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.812
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.812
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N 0.812
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.812
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.812
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.812
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.812
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.812
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.812
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.812
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.812
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.812
SapurV1A.0808s0160 Salix purpurea SapurV1A.0808s0160 N 0.812
Thhalv10027307m.g Eutrema salsugineum Thhalv10027307m.g N 0.812
MTR_1g108500 Medicago truncatula MTR_1g108500 N 0.795
Bra022434 Brassica rapa Bra022434 N 0.792
MTR_0121s0080 Medicago truncatula MTR_0121s0080 N 0.792
MTR_3g067870 Medicago truncatula MTR_3g067870 N 0.792
MTR_3g067910 Medicago truncatula MTR_3g067910 N 0.792
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.792
Cagra.1968s0094 Capsella grandiflora Cagra.1968s0094 N 0.792
Carubv10010156m.g Capsella rubella Carubv10010156m.g N 0.792
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.792
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.792
evm.TU.supercontig_347.8 Carica papaya evm.TU.supercontig_347.8 N 0.792
MDP0000221590 Malus domestica MDP0000221590 N 0.792
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.792
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.792
LjSGA_025167.1 Lotus japonicus LjSGA_025167.1 N 0.792
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.789
Al_scaffold_0002_1221 Arabidopsis lyrata Al_scaffold_0002_1221 N 0.771
AGL28 Arabidopsis thaliana AT1G01530 N 0.771
GLYMA10G10840 Glycine max GLYMA10G10840 N 0.771
GLYMA10G10860 Glycine max GLYMA10G10860 N 0.771
GLYMA10G10930 Glycine max GLYMA10G10930 N 0.771
MTR_0121s0100 Medicago truncatula MTR_0121s0100 N 0.771
MTR_1g075570 Medicago truncatula MTR_1g075570 N 0.771
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.771
Cagra.1695s0023 Capsella grandiflora Cagra.1695s0023 N 0.771
Carubv10007644m.g Capsella rubella Carubv10007644m.g N 0.771
evm.TU.contig_35157.1 Carica papaya evm.TU.contig_35157.1 N 0.771
evm.TU.supercontig_1259.1 Carica papaya evm.TU.supercontig_1259.1 N 0.771
evm.TU.supercontig_439.1 Carica papaya evm.TU.supercontig_439.1 N 0.771
evm.TU.supercontig_505.6 Carica papaya evm.TU.supercontig_505.6 N 0.771
evm.TU.supercontig_758.1 Carica papaya evm.TU.supercontig_758.1 N 0.771
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.771
AGL23 Arabidopsis thaliana AT1G65360 N 0.750
GLYMA10G10640 Glycine max GLYMA10G10640 N 0.750
GLYMA10G10770 Glycine max GLYMA10G10770 N 0.750
GLYMA10G10900 Glycine max GLYMA10G10900 N 0.750
GLYMA10G11450 Glycine max GLYMA10G11450 N 0.750
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.750
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.750
PRUPE_ppa022494mg Prunus persica PRUPE_ppa022494mg N 0.750
TCM_040735 Theobroma cacao TCM_040735 N 0.750
Pm021017 Prunus mume Pm021017 N 0.750
Pm021070 Prunus mume Pm021070 N 0.750
cassava8711.m1 Manihot esculenta cassava8711.m1 N 0.750
mgf022790m Mimulus guttatus mgf022790m N 0.750
evm.TU.contig_24748.5 Carica papaya evm.TU.contig_24748.5 N 0.750
evm.TU.contig_27553.3 Carica papaya evm.TU.contig_27553.3 N 0.750
evm.TU.contig_33091.3 Carica papaya evm.TU.contig_33091.3 N 0.750
evm.TU.contig_37082 Carica papaya evm.TU.contig_37082 N 0.750
evm.TU.contig_37489 Carica papaya evm.TU.contig_37489 N 0.750
evm.TU.contig_38155.1 Carica papaya evm.TU.contig_38155.1 N 0.750
evm.TU.supercontig_347.10 Carica papaya evm.TU.supercontig_347.10 N 0.750
evm.TU.supercontig_347.2 Carica papaya evm.TU.supercontig_347.2 N 0.750
evm.TU.supercontig_348.9 Carica papaya evm.TU.supercontig_348.9 N 0.750
evm.TU.supercontig_505.5 Carica papaya evm.TU.supercontig_505.5 N 0.750
evm.TU.supercontig_54.67 Carica papaya evm.TU.supercontig_54.67 N 0.750
evm.TU.supercontig_654.5 Carica papaya evm.TU.supercontig_654.5 N 0.750
evm.TU.supercontig_851.1 Carica papaya evm.TU.supercontig_851.1 N 0.750
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.750
chr5.LjT25B19.190.nd Lotus japonicus chr5.LjT25B19.190.nd N 0.750
Bra011938 Brassica rapa Bra011938 N 0.729
GLYMA10G10610 Glycine max GLYMA10G10610 N 0.729
GLYMA10G10690 Glycine max GLYMA10G10690 N 0.729
GLYMA10G10920 Glycine max GLYMA10G10920 N 0.729
PGSC0003DMG400036160 Solanum tuberosum PGSC0003DMG400036160 N 0.729
PGSC0003DMG400044387 Solanum tuberosum PGSC0003DMG400044387 N 0.729
Solyc01g106710.1 Solanum lycopersicum Solyc01g106710.1 N 0.729
VIT_03s0088g00610 Vitis vinifera VIT_03s0088g00610 N 0.729
29613.m000367 Ricinus communis 29613.m000367 N 0.729
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.729
mgf018529m Mimulus guttatus mgf018529m N 0.729
mgf024307m Mimulus guttatus mgf024307m N 0.729
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.729
evm.TU.contig_35157.2 Carica papaya evm.TU.contig_35157.2 N 0.729
evm.TU.contig_38604 Carica papaya evm.TU.contig_38604 N 0.729
evm.TU.supercontig_695.8 Carica papaya evm.TU.supercontig_695.8 N 0.729
gene01788-v1.0-hybrid Fragaria vesca gene01788-v1.0-hybrid I 0.729
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.729
MDP0000168914 Malus domestica MDP0000168914 N 0.729
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.729
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.729
chr1.CM0088.830.nc Lotus japonicus chr1.CM0088.830.nc N 0.729
chr2.CM0250.170.nc Lotus japonicus chr2.CM0250.170.nc N 0.729
Bo4g070340 Brassica oleracea Bo4g070340 N 0.723
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.708
AGL61 Arabidopsis thaliana AT2G24840 N 0.708
Bo4g165540 Brassica oleracea Bo4g165540 N 0.708
Bra020247 Brassica rapa Bra020247 N 0.708
Bra026764 Brassica rapa Bra026764 N 0.708
GLYMA02G35080 Glycine max GLYMA02G35080 N 0.708
GLYMA17G01771 Glycine max GLYMA17G01771 N 0.708
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.708
MTR_3g080940 Medicago truncatula MTR_3g080940 N 0.708
PGSC0003DMG400044513 Solanum tuberosum PGSC0003DMG400044513 N 0.708
PGSC0003DMG400045239 Solanum tuberosum PGSC0003DMG400045239 N 0.708
POPTR_0017s06710 Populus trichocarpa POPTR_0017s06710 N 0.708
POPTR_0017s06800 Populus trichocarpa POPTR_0017s06800 N 0.708
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.708
Ca_07607 Cicer arietinum Ca_07607 N 0.708
Ca_26354 Cicer arietinum Ca_26354 N 0.708
27866.m000233 Ricinus communis 27866.m000233 N 0.708
cassava21573.m1 Manihot esculenta cassava21573.m1 N 0.708
mgf022147m Mimulus guttatus mgf022147m N 0.708
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.708
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.708
Eucgr.G01185 Eucalyptus grandis Eucgr.G01185 N 0.708
Eucgr.H04834 Eucalyptus grandis Eucgr.H04834 N 0.708
evm.TU.contig_38802 Carica papaya evm.TU.contig_38802 N 0.708
evm.TU.contig_43014 Carica papaya evm.TU.contig_43014 N 0.708
evm.TU.supercontig_348.1 Carica papaya evm.TU.supercontig_348.1 N 0.708
Lus10030663.g Linum usitatissimum Lus10030663.g N 0.708
Lus10031073.g Linum usitatissimum Lus10031073.g N 0.708
Lus10035456.g Linum usitatissimum Lus10035456.g N 0.708
Thhalv10000432m.g Eutrema salsugineum Thhalv10000432m.g N 0.708
Thhalv10017754m.g Eutrema salsugineum Thhalv10017754m.g N 0.708
LjSGA_067087.1 Lotus japonicus LjSGA_067087.1 N 0.708
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.708
LjT01D09.100.nd Lotus japonicus LjT01D09.100.nd N 0.708
PGSC0003DMG400043978 Solanum tuberosum PGSC0003DMG400043978 N 0.702