chr2.CM0904.120.nd (Lotus japonicus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 chr2.CM0904.120.nd T259325_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
chr2.CM0904.120.nd MADS box 18 65

Links

Other MADS box family TFs
Other Lotus japonicus TFs

216 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ca_04665 Cicer arietinum Ca_04665 N 0.896
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.875
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.875
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.875
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.875
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.875
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.875
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.875
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.875
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.854
AGL62 Arabidopsis thaliana AT5G60440 I 0.854
GLYMA20G27320 Glycine max GLYMA20G27320 N 0.854
GLYMA20G27341 Glycine max GLYMA20G27341 N 0.854
MTR_2g030740 Medicago truncatula MTR_2g030740 N 0.854
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.854
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.854
Ca_04659 Cicer arietinum Ca_04659 N 0.854
Ca_04660 Cicer arietinum Ca_04660 N 0.854
Cla006571 Citrullus lanatus Cla006571 N 0.854
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.854
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.854
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.854
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.854
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.854
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.854
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N 0.854
GLYMA10G40070 Glycine max GLYMA10G40070 N 0.833
GLYMA10G40080 Glycine max GLYMA10G40080 N 0.833
MTR_1g012570 Medicago truncatula MTR_1g012570 N 0.833
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.833
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.833
MTR_1g105905 Medicago truncatula MTR_1g105905 N 0.833
MTR_1g108510 Medicago truncatula MTR_1g108510 N 0.833
MTR_2g085250 Medicago truncatula MTR_2g085250 N 0.833
MTR_2g085280 Medicago truncatula MTR_2g085280 N 0.833
MTR_3g030770 Medicago truncatula MTR_3g030770 N 0.833
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.833
MTR_5g045560 Medicago truncatula MTR_5g045560 N 0.833
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.833
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.833
Ca_04662 Cicer arietinum Ca_04662 N 0.833
Pm021071 Prunus mume Pm021071 N 0.833
30099.m001672 Ricinus communis 30099.m001672 N 0.833
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.833
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.833
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.833
Thhalv10015908m.g Eutrema salsugineum Thhalv10015908m.g N 0.833
AGL28 Arabidopsis thaliana AT1G01530 N 0.812
AT4G36590 Arabidopsis thaliana AT4G36590 N 0.812
Bo1g112460 Brassica oleracea Bo1g112460 N 0.812
Bo9g142570 Brassica oleracea Bo9g142570 N 0.812
Bra002480 Brassica rapa Bra002480 N 0.812
Bra022434 Brassica rapa Bra022434 N 0.812
GLYMA13G39016 Glycine max GLYMA13G39016 N 0.812
MTR_5g055100 Medicago truncatula MTR_5g055100 N 0.812
TCM_006323 Theobroma cacao TCM_006323 N 0.812
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.812
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.812
Cagra.1968s0094 Capsella grandiflora Cagra.1968s0094 N 0.812
Carubv10010156m.g Capsella rubella Carubv10010156m.g N 0.812
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.812
Eucgr.I02506 Eucalyptus grandis Eucgr.I02506 N 0.812
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.812
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.812
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.812
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.812
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.812
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.812
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.812
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.812
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.812
MDP0000221590 Malus domestica MDP0000221590 N 0.812
MDP0000434703 Malus domestica MDP0000434703 I 0.812
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.812
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.812
Al_scaffold_0002_1221 Arabidopsis lyrata Al_scaffold_0002_1221 N 0.792
Bo5g113750 Brassica oleracea Bo5g113750 N 0.792
Bra038225 Brassica rapa Bra038225 N 0.792
fgenesh1_pm.C_scaffold_7000337 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000337 N 0.792
MTR_2g093190 Medicago truncatula MTR_2g093190 N 0.792
MTR_5g053390 Medicago truncatula MTR_5g053390 N 0.792
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.792
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.792
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.792
Ca_04661 Cicer arietinum Ca_04661 N 0.792
Pm021018 Prunus mume Pm021018 N 0.792
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.792
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.792
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.792
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N 0.792
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.792
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.792
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.792
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.792
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.792
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.792
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.792
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N 0.792
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.792
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.792
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.792
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.792
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.792
evm.TU.supercontig_758.1 Carica papaya evm.TU.supercontig_758.1 N 0.792
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.792
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.792
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.792
MDP0000233925 Malus domestica MDP0000233925 N 0.792
MDP0000278770 Malus domestica MDP0000278770 N 0.792
LjSGA_025167.1 Lotus japonicus LjSGA_025167.1 N 0.792
AGL23 Arabidopsis thaliana AT1G65360 N 0.771
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.771
MTR_0121s0080 Medicago truncatula MTR_0121s0080 N 0.771
MTR_3g080940 Medicago truncatula MTR_3g080940 N 0.771
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.771
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.771
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.771
Ca_07607 Cicer arietinum Ca_07607 N 0.771
Ca_26354 Cicer arietinum Ca_26354 N 0.771
Pm021070 Prunus mume Pm021070 N 0.771
evm.TU.contig_24748.5 Carica papaya evm.TU.contig_24748.5 N 0.771
evm.TU.contig_27553.3 Carica papaya evm.TU.contig_27553.3 N 0.771
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.771
evm.TU.contig_37082 Carica papaya evm.TU.contig_37082 N 0.771
evm.TU.supercontig_347.10 Carica papaya evm.TU.supercontig_347.10 N 0.771
evm.TU.supercontig_347.2 Carica papaya evm.TU.supercontig_347.2 N 0.771
evm.TU.supercontig_347.8 Carica papaya evm.TU.supercontig_347.8 N 0.771
evm.TU.supercontig_505.5 Carica papaya evm.TU.supercontig_505.5 N 0.771
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.771
evm.TU.supercontig_654.5 Carica papaya evm.TU.supercontig_654.5 N 0.771
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.771
evm.TU.supercontig_851.1 Carica papaya evm.TU.supercontig_851.1 N 0.771
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.771
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.771
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.771
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.771
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.771
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.763
Bo4g165540 Brassica oleracea Bo4g165540 N 0.750
GLYMA10G40060 Glycine max GLYMA10G40060 N 0.750
MTR_1g108580 Medicago truncatula MTR_1g108580 N 0.750
MTR_3g067875 Medicago truncatula MTR_3g067875 N 0.750
PGSC0003DMG400044387 Solanum tuberosum PGSC0003DMG400044387 N 0.750
POPTR_0007s03430 Populus trichocarpa POPTR_0007s03430 N 0.750
PRUPE_ppa023670mg Prunus persica PRUPE_ppa023670mg N 0.750
scaffold_302326.1 Arabidopsis lyrata scaffold_302326.1 I 0.750
Solyc01g106710.1 Solanum lycopersicum Solyc01g106710.1 N 0.750
Pm016629 Prunus mume Pm016629 N 0.750
mgf018529m Mimulus guttatus mgf018529m N 0.750
mgf022790m Mimulus guttatus mgf022790m N 0.750
mgf024307m Mimulus guttatus mgf024307m N 0.750
Cagra.1695s0023 Capsella grandiflora Cagra.1695s0023 N 0.750
Carubv10007644m.g Capsella rubella Carubv10007644m.g N 0.750
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.750
evm.TU.contig_35157.1 Carica papaya evm.TU.contig_35157.1 N 0.750
evm.TU.contig_35157.2 Carica papaya evm.TU.contig_35157.2 N 0.750
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.750
evm.TU.supercontig_1259.1 Carica papaya evm.TU.supercontig_1259.1 N 0.750
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.750
evm.TU.supercontig_505.6 Carica papaya evm.TU.supercontig_505.6 N 0.750
MDP0000168914 Malus domestica MDP0000168914 N 0.750
SapurV1A.0808s0160 Salix purpurea SapurV1A.0808s0160 N 0.750
Thhalv10017754m.g Eutrema salsugineum Thhalv10017754m.g N 0.750
chr1.CM0088.830.nc Lotus japonicus chr1.CM0088.830.nc N 0.750
LjSGA_042140.1 Lotus japonicus LjSGA_042140.1 N 0.750
Bo2g024910 Brassica oleracea Bo2g024910 N 0.729
Bra011938 Brassica rapa Bra011938 N 0.729
MTR_0121s0100 Medicago truncatula MTR_0121s0100 N 0.729
MTR_1g108500 Medicago truncatula MTR_1g108500 N 0.729
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.729
PRUPE_ppa022494mg Prunus persica PRUPE_ppa022494mg N 0.729
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.729
Pm021017 Prunus mume Pm021017 N 0.729
29613.m000367 Ricinus communis 29613.m000367 N 0.729
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.729
cassava41915.m1 Manihot esculenta cassava41915.m1 N 0.729
cassava8711.m1 Manihot esculenta cassava8711.m1 N 0.729
Eucgr.G01185 Eucalyptus grandis Eucgr.G01185 N 0.729
evm.TU.contig_38155.1 Carica papaya evm.TU.contig_38155.1 N 0.729
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.729
Lus10030663.g Linum usitatissimum Lus10030663.g N 0.729
SapurV1A.0019s0700 Salix purpurea SapurV1A.0019s0700 N 0.729
Thhalv10027307m.g Eutrema salsugineum Thhalv10027307m.g N 0.729
LjSGA_067087.1 Lotus japonicus LjSGA_067087.1 N 0.729
LjT01D09.100.nd Lotus japonicus LjT01D09.100.nd N 0.729
Bo4g070340 Brassica oleracea Bo4g070340 N 0.723
Bra020247 Brassica rapa Bra020247 N 0.708
Bra035685 Brassica rapa Bra035685 N 0.708
GLYMA10G10840 Glycine max GLYMA10G10840 N 0.708
GLYMA10G10860 Glycine max GLYMA10G10860 N 0.708
GLYMA10G10920 Glycine max GLYMA10G10920 N 0.708
GLYMA10G10930 Glycine max GLYMA10G10930 N 0.708
PGSC0003DMG400035221 Solanum tuberosum PGSC0003DMG400035221 N 0.708
PGSC0003DMG400036160 Solanum tuberosum PGSC0003DMG400036160 N 0.708
PGSC0003DMG400043633 Solanum tuberosum PGSC0003DMG400043633 N 0.708
POPTR_0009s08740 Populus trichocarpa POPTR_0009s08740 N 0.708
TCM_040735 Theobroma cacao TCM_040735 N 0.708
VIT_03s0088g00610 Vitis vinifera VIT_03s0088g00610 N 0.708
30099.m001671 Ricinus communis 30099.m001671 N 0.708
cassava21573.m1 Manihot esculenta cassava21573.m1 N 0.708
mgf022147m Mimulus guttatus mgf022147m N 0.708
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.708
Aquca_054_00126 Aquilegia coerulea Aquca_054_00126 N 0.708
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.708
Eucgr.H04834 Eucalyptus grandis Eucgr.H04834 N 0.708
evm.TU.contig_38604 Carica papaya evm.TU.contig_38604 N 0.708
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.708
evm.TU.supercontig_439.1 Carica papaya evm.TU.supercontig_439.1 N 0.708
evm.TU.supercontig_54.67 Carica papaya evm.TU.supercontig_54.67 N 0.708
gene01788-v1.0-hybrid Fragaria vesca gene01788-v1.0-hybrid I 0.708
Lus10030824.g Linum usitatissimum Lus10030824.g N 0.708
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.708
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.708
chr5.LjT25B19.190.nd Lotus japonicus chr5.LjT25B19.190.nd N 0.708
LjSGA_082681.2 Lotus japonicus LjSGA_082681.2 N 0.708
LjSGA_120826.2 Lotus japonicus LjSGA_120826.2 N 0.708