Carubv10007644m.g (Capsella rubella)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Carubv10007644m.g T257751_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10007644m MADS box 15 62

Links

Other MADS box family TFs
Other Capsella rubella TFs

174 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.1695s0023 Capsella grandiflora Cagra.1695s0023 N 1.000
AT4G36590 Arabidopsis thaliana AT4G36590 N 0.875
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.875
fgenesh1_pm.C_scaffold_7000337 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000337 N 0.854
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.833
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.812
Bo1g112460 Brassica oleracea Bo1g112460 N 0.812
Bo5g113750 Brassica oleracea Bo5g113750 N 0.812
TCM_006323 Theobroma cacao TCM_006323 N 0.812
Ca_04659 Cicer arietinum Ca_04659 N 0.812
Ca_04660 Cicer arietinum Ca_04660 N 0.812
Cla006571 Citrullus lanatus Cla006571 N 0.812
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.812
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.812
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.812
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.812
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.812
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.812
Thhalv10027307m.g Eutrema salsugineum Thhalv10027307m.g N 0.812
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N 0.812
Al_scaffold_0002_1221 Arabidopsis lyrata Al_scaffold_0002_1221 N 0.792
Bo9g142570 Brassica oleracea Bo9g142570 N 0.792
Bra002480 Brassica rapa Bra002480 N 0.792
Bra022434 Brassica rapa Bra022434 N 0.792
Bra038225 Brassica rapa Bra038225 N 0.792
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.792
GLYMA20G27320 Glycine max GLYMA20G27320 N 0.792
GLYMA20G27341 Glycine max GLYMA20G27341 N 0.792
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.792
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.792
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.792
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.792
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.792
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.792
Ca_04661 Cicer arietinum Ca_04661 N 0.792
Ca_04665 Cicer arietinum Ca_04665 N 0.792
Pm021018 Prunus mume Pm021018 N 0.792
Pm021071 Prunus mume Pm021071 N 0.792
30099.m001672 Ricinus communis 30099.m001672 N 0.792
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.792
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N 0.792
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.792
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.792
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.792
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.792
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.792
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.792
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N 0.792
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.792
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.792
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.792
MDP0000434703 Malus domestica MDP0000434703 I 0.792
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.792
AGL28 Arabidopsis thaliana AT1G01530 N 0.771
AGL62 Arabidopsis thaliana AT5G60440 I 0.771
GLYMA10G40070 Glycine max GLYMA10G40070 N 0.771
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.771
MTR_1g012570 Medicago truncatula MTR_1g012570 N 0.771
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.771
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.771
MTR_1g108510 Medicago truncatula MTR_1g108510 N 0.771
MTR_2g085250 Medicago truncatula MTR_2g085250 N 0.771
MTR_2g085280 Medicago truncatula MTR_2g085280 N 0.771
MTR_3g030770 Medicago truncatula MTR_3g030770 N 0.771
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.771
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.771
MTR_5g045560 Medicago truncatula MTR_5g045560 N 0.771
MTR_5g055100 Medicago truncatula MTR_5g055100 N 0.771
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.771
scaffold_302326.1 Arabidopsis lyrata scaffold_302326.1 I 0.771
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.771
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.771
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.771
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.771
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.771
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.771
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.771
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.771
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.771
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.771
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.771
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.771
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.771
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.771
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.771
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.771
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.771
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.771
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.771
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.771
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.771
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.771
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.771
MDP0000221590 Malus domestica MDP0000221590 N 0.771
MDP0000233925 Malus domestica MDP0000233925 N 0.771
MDP0000278770 Malus domestica MDP0000278770 N 0.771
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.771
GLYMA10G40080 Glycine max GLYMA10G40080 N 0.750
GLYMA13G39016 Glycine max GLYMA13G39016 N 0.750
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.750
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.750
PRUPE_ppa022494mg Prunus persica PRUPE_ppa022494mg N 0.750
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.750
Pm021017 Prunus mume Pm021017 N 0.750
mgf022147m Mimulus guttatus mgf022147m N 0.750
Eucgr.I02506 Eucalyptus grandis Eucgr.I02506 N 0.750
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.750
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.750
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.750
evm.TU.supercontig_1259.1 Carica papaya evm.TU.supercontig_1259.1 N 0.750
evm.TU.supercontig_347.8 Carica papaya evm.TU.supercontig_347.8 N 0.750
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.750
evm.TU.supercontig_505.6 Carica papaya evm.TU.supercontig_505.6 N 0.750
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.750
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.750
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.750
Lus10030663.g Linum usitatissimum Lus10030663.g N 0.750
SapurV1A.0808s0160 Salix purpurea SapurV1A.0808s0160 N 0.750
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.750
Thhalv10015908m.g Eutrema salsugineum Thhalv10015908m.g N 0.750
chr2.CM0904.120.nd Lotus japonicus chr2.CM0904.120.nd N 0.750
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.750
Bo2g024910 Brassica oleracea Bo2g024910 N 0.729
MTR_1g105905 Medicago truncatula MTR_1g105905 N 0.729
MTR_2g030740 Medicago truncatula MTR_2g030740 N 0.729
MTR_2g093190 Medicago truncatula MTR_2g093190 N 0.729
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.729
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.729
Ca_04662 Cicer arietinum Ca_04662 N 0.729
cassava8711.m1 Manihot esculenta cassava8711.m1 N 0.729
mgf018529m Mimulus guttatus mgf018529m N 0.729
mgf024307m Mimulus guttatus mgf024307m N 0.729
Cagra.1968s0094 Capsella grandiflora Cagra.1968s0094 N 0.729
Carubv10010156m.g Capsella rubella Carubv10010156m.g N 0.729
evm.TU.contig_35157.1 Carica papaya evm.TU.contig_35157.1 N 0.729
evm.TU.supercontig_851.1 Carica papaya evm.TU.supercontig_851.1 N 0.729
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.729
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.729
Lus10030824.g Linum usitatissimum Lus10030824.g N 0.729
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.729
LjSGA_025167.1 Lotus japonicus LjSGA_025167.1 N 0.729
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.711
AGL23 Arabidopsis thaliana AT1G65360 N 0.708
Bo4g165540 Brassica oleracea Bo4g165540 N 0.708
Bra011938 Brassica rapa Bra011938 N 0.708
Bra020247 Brassica rapa Bra020247 N 0.708
MTR_1g108580 Medicago truncatula MTR_1g108580 N 0.708
MTR_3g067875 Medicago truncatula MTR_3g067875 N 0.708
MTR_5g053390 Medicago truncatula MTR_5g053390 N 0.708
PGSC0003DMG400035221 Solanum tuberosum PGSC0003DMG400035221 N 0.708
PGSC0003DMG400036160 Solanum tuberosum PGSC0003DMG400036160 N 0.708
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.708
PGSC0003DMG400043633 Solanum tuberosum PGSC0003DMG400043633 N 0.708
PGSC0003DMG400044387 Solanum tuberosum PGSC0003DMG400044387 N 0.708
PGSC0003DMG400044513 Solanum tuberosum PGSC0003DMG400044513 N 0.708
POPTR_0007s03430 Populus trichocarpa POPTR_0007s03430 N 0.708
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.708
Solyc01g106710.1 Solanum lycopersicum Solyc01g106710.1 N 0.708
TCM_040735 Theobroma cacao TCM_040735 N 0.708
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.708
VIT_03s0088g00610 Vitis vinifera VIT_03s0088g00610 N 0.708
Pm021070 Prunus mume Pm021070 N 0.708
29613.m000367 Ricinus communis 29613.m000367 N 0.708
mgf022790m Mimulus guttatus mgf022790m N 0.708
evm.TU.contig_38604 Carica papaya evm.TU.contig_38604 N 0.708
evm.TU.supercontig_347.10 Carica papaya evm.TU.supercontig_347.10 N 0.708
evm.TU.supercontig_439.1 Carica papaya evm.TU.supercontig_439.1 N 0.708
evm.TU.supercontig_54.67 Carica papaya evm.TU.supercontig_54.67 N 0.708
evm.TU.supercontig_758.1 Carica papaya evm.TU.supercontig_758.1 N 0.708
gene01788-v1.0-hybrid Fragaria vesca gene01788-v1.0-hybrid I 0.708
MDP0000168914 Malus domestica MDP0000168914 N 0.708
Thhalv10017754m.g Eutrema salsugineum Thhalv10017754m.g N 0.708
MTR_1g108500 Medicago truncatula MTR_1g108500 N 0.705
Bo4g070340 Brassica oleracea Bo4g070340 N 0.702