Bra002480 (Brassica rapa)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Bra002480 T253224_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Bra002480.1-P MADS box 15 62

Links

Other MADS box family TFs
Other Brassica rapa TFs

256 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo9g142570 Brassica oleracea Bo9g142570 N 0.979
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.896
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.875
AGL62 Arabidopsis thaliana AT5G60440 I 0.875
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.875
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.875
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.875
MTR_1g108510 Medicago truncatula MTR_1g108510 N 0.875
MTR_3g030770 Medicago truncatula MTR_3g030770 N 0.875
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.875
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.875
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.875
Cla006571 Citrullus lanatus Cla006571 N 0.875
30099.m001672 Ricinus communis 30099.m001672 N 0.875
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.875
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.875
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.875
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.875
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.875
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.875
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.875
Al_scaffold_0002_1221 Arabidopsis lyrata Al_scaffold_0002_1221 N 0.854
GLYMA20G27320 Glycine max GLYMA20G27320 N 0.854
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.854
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.854
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.854
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.854
Ca_04665 Cicer arietinum Ca_04665 N 0.854
Pm021071 Prunus mume Pm021071 N 0.854
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.854
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.854
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.854
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.854
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.854
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.854
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.854
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.854
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.854
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.854
AGL28 Arabidopsis thaliana AT1G01530 N 0.833
AT4G36590 Arabidopsis thaliana AT4G36590 N 0.833
GLYMA10G40080 Glycine max GLYMA10G40080 N 0.833
GLYMA13G39016 Glycine max GLYMA13G39016 N 0.833
GLYMA20G27341 Glycine max GLYMA20G27341 N 0.833
MTR_1g012570 Medicago truncatula MTR_1g012570 N 0.833
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.833
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.833
MTR_1g105905 Medicago truncatula MTR_1g105905 N 0.833
MTR_2g030740 Medicago truncatula MTR_2g030740 N 0.833
MTR_2g093190 Medicago truncatula MTR_2g093190 N 0.833
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.833
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.833
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.833
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.833
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.833
TCM_006323 Theobroma cacao TCM_006323 N 0.833
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.833
Pm021018 Prunus mume Pm021018 N 0.833
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.833
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.833
Eucgr.I02506 Eucalyptus grandis Eucgr.I02506 N 0.833
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.833
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.833
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.833
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.833
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.833
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.833
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.833
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.833
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.833
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.833
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.833
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.833
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.833
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.833
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.833
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.833
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.833
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.833
MDP0000434703 Malus domestica MDP0000434703 I 0.833
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.833
Bo1g112460 Brassica oleracea Bo1g112460 N 0.812
fgenesh1_pm.C_scaffold_7000337 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000337 N 0.812
GLYMA10G40070 Glycine max GLYMA10G40070 N 0.812
MTR_2g085250 Medicago truncatula MTR_2g085250 N 0.812
MTR_2g085280 Medicago truncatula MTR_2g085280 N 0.812
MTR_5g045560 Medicago truncatula MTR_5g045560 N 0.812
scaffold_302326.1 Arabidopsis lyrata scaffold_302326.1 I 0.812
Ca_04659 Cicer arietinum Ca_04659 N 0.812
Ca_04660 Cicer arietinum Ca_04660 N 0.812
Ca_04662 Cicer arietinum Ca_04662 N 0.812
mgf022790m Mimulus guttatus mgf022790m N 0.812
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.812
Cagra.1968s0094 Capsella grandiflora Cagra.1968s0094 N 0.812
Carubv10010156m.g Capsella rubella Carubv10010156m.g N 0.812
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N 0.812
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.812
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.812
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.812
evm.TU.supercontig_347.8 Carica papaya evm.TU.supercontig_347.8 N 0.812
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N 0.812
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.812
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.812
MDP0000233925 Malus domestica MDP0000233925 N 0.812
MDP0000278770 Malus domestica MDP0000278770 N 0.812
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.812
Thhalv10015908m.g Eutrema salsugineum Thhalv10015908m.g N 0.812
chr2.CM0904.120.nd Lotus japonicus chr2.CM0904.120.nd N 0.812
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N 0.812
Bo5g113750 Brassica oleracea Bo5g113750 N 0.792
Bra038225 Brassica rapa Bra038225 N 0.792
MTR_1g108580 Medicago truncatula MTR_1g108580 N 0.792
MTR_5g055100 Medicago truncatula MTR_5g055100 N 0.792
POPTR_0007s03430 Populus trichocarpa POPTR_0007s03430 N 0.792
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.792
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.792
mgf022147m Mimulus guttatus mgf022147m N 0.792
Cagra.1695s0023 Capsella grandiflora Cagra.1695s0023 N 0.792
Carubv10007644m.g Capsella rubella Carubv10007644m.g N 0.792
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.792
evm.TU.contig_35157.1 Carica papaya evm.TU.contig_35157.1 N 0.792
evm.TU.contig_46312 Carica papaya evm.TU.contig_46312 N 0.792
evm.TU.supercontig_1259.1 Carica papaya evm.TU.supercontig_1259.1 N 0.792
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.792
evm.TU.supercontig_505.6 Carica papaya evm.TU.supercontig_505.6 N 0.792
evm.TU.supercontig_54.67 Carica papaya evm.TU.supercontig_54.67 N 0.792
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.792
Bra022434 Brassica rapa Bra022434 N 0.771
MTR_0121s0100 Medicago truncatula MTR_0121s0100 N 0.771
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.771
VIT_03s0088g00610 Vitis vinifera VIT_03s0088g00610 N 0.771
Ca_04661 Cicer arietinum Ca_04661 N 0.771
Pm021070 Prunus mume Pm021070 N 0.771
mgf018529m Mimulus guttatus mgf018529m N 0.771
mgf024307m Mimulus guttatus mgf024307m N 0.771
evm.TU.supercontig_758.1 Carica papaya evm.TU.supercontig_758.1 N 0.771
evm.TU.supercontig_851.1 Carica papaya evm.TU.supercontig_851.1 N 0.771
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.771
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.771
MDP0000221590 Malus domestica MDP0000221590 N 0.771
Thhalv10027307m.g Eutrema salsugineum Thhalv10027307m.g N 0.771
AGL23 Arabidopsis thaliana AT1G65360 N 0.750
Bo2g024910 Brassica oleracea Bo2g024910 N 0.750
Bo4g165540 Brassica oleracea Bo4g165540 N 0.750
Bra020247 Brassica rapa Bra020247 N 0.750
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.750
MTR_1g108500 Medicago truncatula MTR_1g108500 N 0.750
MTR_3g080940 Medicago truncatula MTR_3g080940 N 0.750
MTR_5g053390 Medicago truncatula MTR_5g053390 N 0.750
PGSC0003DMG400035221 Solanum tuberosum PGSC0003DMG400035221 N 0.750
PGSC0003DMG400036160 Solanum tuberosum PGSC0003DMG400036160 N 0.750
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.750
PGSC0003DMG400043633 Solanum tuberosum PGSC0003DMG400043633 N 0.750
PGSC0003DMG400044387 Solanum tuberosum PGSC0003DMG400044387 N 0.750
Solyc01g106710.1 Solanum lycopersicum Solyc01g106710.1 N 0.750
TCM_040735 Theobroma cacao TCM_040735 N 0.750
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.750
Ca_07607 Cicer arietinum Ca_07607 N 0.750
Ca_26354 Cicer arietinum Ca_26354 N 0.750
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.750
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.750
evm.TU.contig_24748.5 Carica papaya evm.TU.contig_24748.5 N 0.750
evm.TU.contig_27553.3 Carica papaya evm.TU.contig_27553.3 N 0.750
evm.TU.contig_37082 Carica papaya evm.TU.contig_37082 N 0.750
evm.TU.contig_38604 Carica papaya evm.TU.contig_38604 N 0.750
evm.TU.supercontig_347.10 Carica papaya evm.TU.supercontig_347.10 N 0.750
evm.TU.supercontig_347.2 Carica papaya evm.TU.supercontig_347.2 N 0.750
evm.TU.supercontig_439.1 Carica papaya evm.TU.supercontig_439.1 N 0.750
evm.TU.supercontig_505.5 Carica papaya evm.TU.supercontig_505.5 N 0.750
evm.TU.supercontig_654.5 Carica papaya evm.TU.supercontig_654.5 N 0.750
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.750
Lus10030663.g Linum usitatissimum Lus10030663.g N 0.750
Lus10031073.g Linum usitatissimum Lus10031073.g N 0.750
SapurV1A.0808s0160 Salix purpurea SapurV1A.0808s0160 N 0.750
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.750
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.750
evm.TU.contig_41453 Carica papaya evm.TU.contig_41453 N 0.739
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.737
MTR_1g075570 Medicago truncatula MTR_1g075570 N 0.733
GLYMA10G10840 Glycine max GLYMA10G10840 N 0.729
GLYMA10G10860 Glycine max GLYMA10G10860 N 0.729
GLYMA10G10930 Glycine max GLYMA10G10930 N 0.729
GLYMA10G40060 Glycine max GLYMA10G40060 N 0.729
MTR_0121s0080 Medicago truncatula MTR_0121s0080 N 0.729
MTR_3g067875 Medicago truncatula MTR_3g067875 N 0.729
PGSC0003DMG400039835 Solanum tuberosum PGSC0003DMG400039835 N 0.729
POPTR_0009s08740 Populus trichocarpa POPTR_0009s08740 N 0.729
PRUPE_ppa022494mg Prunus persica PRUPE_ppa022494mg N 0.729
PRUPE_ppa023670mg Prunus persica PRUPE_ppa023670mg N 0.729
Solyc01g060310.1 Solanum lycopersicum Solyc01g060310.1 N 0.729
TCM_006324 Theobroma cacao TCM_006324 N 0.729
Pm016629 Prunus mume Pm016629 N 0.729
Pm021017 Prunus mume Pm021017 N 0.729
29613.m000367 Ricinus communis 29613.m000367 N 0.729
cassava8711.m1 Manihot esculenta cassava8711.m1 N 0.729
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.729
Eucgr.H04834 Eucalyptus grandis Eucgr.H04834 N 0.729
evm.TU.contig_33091.3 Carica papaya evm.TU.contig_33091.3 N 0.729
evm.TU.contig_35157.2 Carica papaya evm.TU.contig_35157.2 N 0.729
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.729
evm.TU.supercontig_348.9 Carica papaya evm.TU.supercontig_348.9 N 0.729
gene01788-v1.0-hybrid Fragaria vesca gene01788-v1.0-hybrid I 0.729
Lus10030824.g Linum usitatissimum Lus10030824.g N 0.729
Lus10035456.g Linum usitatissimum Lus10035456.g N 0.729
MDP0000168914 Malus domestica MDP0000168914 N 0.729
Thhalv10000432m.g Eutrema salsugineum Thhalv10000432m.g N 0.729
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.729
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.729
Thhalv10017754m.g Eutrema salsugineum Thhalv10017754m.g N 0.729
chr1.CM0088.830.nc Lotus japonicus chr1.CM0088.830.nc N 0.729
LjSGA_042140.1 Lotus japonicus LjSGA_042140.1 N 0.729
Bra035685 Brassica rapa Bra035685 N 0.723
PGSC0003DMG400036006 Solanum tuberosum PGSC0003DMG400036006 N 0.723
PGSC0003DMG400046706 Solanum tuberosum PGSC0003DMG400046706 N 0.723
PGSC0003DMG400046733 Solanum tuberosum PGSC0003DMG400046733 N 0.723
Solyc01g060300.1 Solanum lycopersicum Solyc01g060300.1 N 0.723
evm.TU.contig_33091.2 Carica papaya evm.TU.contig_33091.2 N 0.714
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.708
AGL61 Arabidopsis thaliana AT2G24840 N 0.708
Bo2g024870 Brassica oleracea Bo2g024870 N 0.708
Bra011938 Brassica rapa Bra011938 N 0.708
GLYMA10G10640 Glycine max GLYMA10G10640 N 0.708
GLYMA10G10770 Glycine max GLYMA10G10770 N 0.708
GLYMA10G10900 Glycine max GLYMA10G10900 N 0.708
GLYMA10G11450 Glycine max GLYMA10G11450 N 0.708
PGSC0003DMG400006290 Solanum tuberosum PGSC0003DMG400006290 N 0.708
PGSC0003DMG400040127 Solanum tuberosum PGSC0003DMG400040127 N 0.708
PGSC0003DMG400044513 Solanum tuberosum PGSC0003DMG400044513 N 0.708
PGSC0003DMG400045239 Solanum tuberosum PGSC0003DMG400045239 N 0.708
POPTR_0008s04110 Populus trichocarpa POPTR_0008s04110 N 0.708
POPTR_0017s06710 Populus trichocarpa POPTR_0017s06710 N 0.708
POPTR_0017s06800 Populus trichocarpa POPTR_0017s06800 N 0.708
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.708
Solyc04g025050.1 Solanum lycopersicum Solyc04g025050.1 N 0.708
TCM_006325 Theobroma cacao TCM_006325 N 0.708
TCM_029518 Theobroma cacao TCM_029518 I 0.708
29693.m002039 Ricinus communis 29693.m002039 I 0.708
cassava21573.m1 Manihot esculenta cassava21573.m1 N 0.708
mgf022625m Mimulus guttatus mgf022625m N 0.708
Aquca_054_00126 Aquilegia coerulea Aquca_054_00126 N 0.708
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.708
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.708
Eucgr.G01185 Eucalyptus grandis Eucgr.G01185 N 0.708
evm.TU.contig_38155.1 Carica papaya evm.TU.contig_38155.1 N 0.708
evm.TU.supercontig_695.8 Carica papaya evm.TU.supercontig_695.8 N 0.708
Gorai.010G165500 Gossypium raimondii Gorai.010G165500 I 0.708
Gorai.012G163200 Gossypium raimondii Gorai.012G163200 N 0.708
Gorai.N026300 Gossypium raimondii Gorai.N026300 N 0.708
MDP0000274606 Malus domestica MDP0000274606 N 0.708
SapurV1A.0019s0700 Salix purpurea SapurV1A.0019s0700 N 0.708
Thhalv10003315m.g Eutrema salsugineum Thhalv10003315m.g N 0.708
LjSGA_025167.1 Lotus japonicus LjSGA_025167.1 N 0.708
Bo4g070340 Brassica oleracea Bo4g070340 N 0.702
PGSC0003DMG400036190 Solanum tuberosum PGSC0003DMG400036190 N 0.702
PGSC0003DMG400045423 Solanum tuberosum PGSC0003DMG400045423 N 0.700
evm.TU.contig_37489 Carica papaya evm.TU.contig_37489 N 0.700