PGSC0003DMG400046706 (Solanum tuberosum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 PGSC0003DMG400046706 T255741_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400097135 MADS box 14 60

Links

Other MADS box family TFs
Other Solanum tuberosum TFs

25 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG400006290 Solanum tuberosum PGSC0003DMG400006290 N 0.872
Solyc01g060310.1 Solanum lycopersicum Solyc01g060310.1 N 0.851
Solyc01g060300.1 Solanum lycopersicum Solyc01g060300.1 N 0.830
PGSC0003DMG400041956 Solanum tuberosum PGSC0003DMG400041956 N 0.783
PGSC0003DMG400039835 Solanum tuberosum PGSC0003DMG400039835 N 0.766
PGSC0003DMG400046733 Solanum tuberosum PGSC0003DMG400046733 N 0.766
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.729
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.729
Bra002480 Brassica rapa Bra002480 N 0.723
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.723
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.723
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.711
AGL62 Arabidopsis thaliana AT5G60440 I 0.702
Bo9g142570 Brassica oleracea Bo9g142570 N 0.702
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.702
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.702
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.702
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.702
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.702
PGSC0003DMG400036190 Solanum tuberosum PGSC0003DMG400036190 N 0.702
PGSC0003DMG400038207 Solanum tuberosum PGSC0003DMG400038207 I 0.702
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.702
mgf022147m Mimulus guttatus mgf022147m N 0.702
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.702
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.702