Bo9g142570 (Brassica oleracea)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Bo9g142570 T253205_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Bo9g142570.1 MADS box 15 62

Links

Other MADS box family TFs
Other Brassica oleracea TFs

236 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra002480 Brassica rapa Bra002480 N 0.979
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.875
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.875
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.875
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.875
MTR_1g108510 Medicago truncatula MTR_1g108510 N 0.875
MTR_3g030770 Medicago truncatula MTR_3g030770 N 0.875
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.875
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.875
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.854
AGL62 Arabidopsis thaliana AT5G60440 I 0.854
GLYMA20G27320 Glycine max GLYMA20G27320 N 0.854
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.854
Ca_04665 Cicer arietinum Ca_04665 N 0.854
Cla006571 Citrullus lanatus Cla006571 N 0.854
30099.m001672 Ricinus communis 30099.m001672 N 0.854
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.854
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.854
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.854
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.854
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.854
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.854
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.854
Al_scaffold_0002_1221 Arabidopsis lyrata Al_scaffold_0002_1221 N 0.833
AT4G36590 Arabidopsis thaliana AT4G36590 N 0.833
Bo1g112460 Brassica oleracea Bo1g112460 N 0.833
GLYMA10G40080 Glycine max GLYMA10G40080 N 0.833
GLYMA13G39016 Glycine max GLYMA13G39016 N 0.833
GLYMA20G27341 Glycine max GLYMA20G27341 N 0.833
MTR_1g012570 Medicago truncatula MTR_1g012570 N 0.833
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.833
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.833
MTR_1g105905 Medicago truncatula MTR_1g105905 N 0.833
MTR_2g030740 Medicago truncatula MTR_2g030740 N 0.833
MTR_2g093190 Medicago truncatula MTR_2g093190 N 0.833
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.833
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.833
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.833
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.833
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.833
Pm021071 Prunus mume Pm021071 N 0.833
mgf022790m Mimulus guttatus mgf022790m N 0.833
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.833
Eucgr.I02506 Eucalyptus grandis Eucgr.I02506 N 0.833
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.833
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.833
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.833
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.833
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.833
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.833
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.833
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.833
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.833
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.833
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.833
AGL28 Arabidopsis thaliana AT1G01530 N 0.812
Bo5g113750 Brassica oleracea Bo5g113750 N 0.812
Bra038225 Brassica rapa Bra038225 N 0.812
fgenesh1_pm.C_scaffold_7000337 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000337 N 0.812
GLYMA10G40070 Glycine max GLYMA10G40070 N 0.812
MTR_2g085250 Medicago truncatula MTR_2g085250 N 0.812
MTR_2g085280 Medicago truncatula MTR_2g085280 N 0.812
MTR_5g045560 Medicago truncatula MTR_5g045560 N 0.812
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.812
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.812
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.812
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.812
TCM_006323 Theobroma cacao TCM_006323 N 0.812
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.812
Ca_04659 Cicer arietinum Ca_04659 N 0.812
Ca_04660 Cicer arietinum Ca_04660 N 0.812
Ca_04662 Cicer arietinum Ca_04662 N 0.812
Pm021018 Prunus mume Pm021018 N 0.812
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.812
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.812
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.812
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.812
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.812
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N 0.812
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.812
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.812
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.812
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.812
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.812
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.812
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.812
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.812
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N 0.812
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.812
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.812
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.812
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.812
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.812
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.812
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.812
MDP0000434703 Malus domestica MDP0000434703 I 0.812
chr2.CM0904.120.nd Lotus japonicus chr2.CM0904.120.nd N 0.812
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N 0.812
Bra022434 Brassica rapa Bra022434 N 0.792
MTR_1g108580 Medicago truncatula MTR_1g108580 N 0.792
MTR_5g055100 Medicago truncatula MTR_5g055100 N 0.792
scaffold_302326.1 Arabidopsis lyrata scaffold_302326.1 I 0.792
Cagra.1695s0023 Capsella grandiflora Cagra.1695s0023 N 0.792
Cagra.1968s0094 Capsella grandiflora Cagra.1968s0094 N 0.792
Carubv10007644m.g Capsella rubella Carubv10007644m.g N 0.792
Carubv10010156m.g Capsella rubella Carubv10010156m.g N 0.792
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.792
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.792
evm.TU.contig_46312 Carica papaya evm.TU.contig_46312 N 0.792
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.792
evm.TU.supercontig_347.8 Carica papaya evm.TU.supercontig_347.8 N 0.792
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.792
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.792
MDP0000233925 Malus domestica MDP0000233925 N 0.792
MDP0000278770 Malus domestica MDP0000278770 N 0.792
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.792
Thhalv10015908m.g Eutrema salsugineum Thhalv10015908m.g N 0.792
Bo2g024910 Brassica oleracea Bo2g024910 N 0.771
MTR_0121s0100 Medicago truncatula MTR_0121s0100 N 0.771
POPTR_0007s03430 Populus trichocarpa POPTR_0007s03430 N 0.771
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.771
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.771
Ca_04661 Cicer arietinum Ca_04661 N 0.771
mgf022147m Mimulus guttatus mgf022147m N 0.771
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.771
evm.TU.contig_35157.1 Carica papaya evm.TU.contig_35157.1 N 0.771
evm.TU.supercontig_1259.1 Carica papaya evm.TU.supercontig_1259.1 N 0.771
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.771
evm.TU.supercontig_505.6 Carica papaya evm.TU.supercontig_505.6 N 0.771
evm.TU.supercontig_54.67 Carica papaya evm.TU.supercontig_54.67 N 0.771
evm.TU.supercontig_758.1 Carica papaya evm.TU.supercontig_758.1 N 0.771
Lus10030663.g Linum usitatissimum Lus10030663.g N 0.771
MDP0000221590 Malus domestica MDP0000221590 N 0.771
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.771
Thhalv10027307m.g Eutrema salsugineum Thhalv10027307m.g N 0.771
AGL23 Arabidopsis thaliana AT1G65360 N 0.750
GLYMA10G10840 Glycine max GLYMA10G10840 N 0.750
GLYMA10G10860 Glycine max GLYMA10G10860 N 0.750
GLYMA10G10930 Glycine max GLYMA10G10930 N 0.750
GLYMA10G40060 Glycine max GLYMA10G40060 N 0.750
MTR_1g108500 Medicago truncatula MTR_1g108500 N 0.750
MTR_5g053390 Medicago truncatula MTR_5g053390 N 0.750
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.750
VIT_03s0088g00610 Vitis vinifera VIT_03s0088g00610 N 0.750
Pm021070 Prunus mume Pm021070 N 0.750
mgf018529m Mimulus guttatus mgf018529m N 0.750
mgf024307m Mimulus guttatus mgf024307m N 0.750
evm.TU.contig_24748.5 Carica papaya evm.TU.contig_24748.5 N 0.750
evm.TU.contig_27553.3 Carica papaya evm.TU.contig_27553.3 N 0.750
evm.TU.contig_37082 Carica papaya evm.TU.contig_37082 N 0.750
evm.TU.supercontig_347.10 Carica papaya evm.TU.supercontig_347.10 N 0.750
evm.TU.supercontig_347.2 Carica papaya evm.TU.supercontig_347.2 N 0.750
evm.TU.supercontig_505.5 Carica papaya evm.TU.supercontig_505.5 N 0.750
evm.TU.supercontig_654.5 Carica papaya evm.TU.supercontig_654.5 N 0.750
evm.TU.supercontig_851.1 Carica papaya evm.TU.supercontig_851.1 N 0.750
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.750
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.750
Lus10030824.g Linum usitatissimum Lus10030824.g N 0.750
Lus10035456.g Linum usitatissimum Lus10035456.g N 0.750
SapurV1A.0808s0160 Salix purpurea SapurV1A.0808s0160 N 0.750
Thhalv10017754m.g Eutrema salsugineum Thhalv10017754m.g N 0.750
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.750
MTR_1g075570 Medicago truncatula MTR_1g075570 N 0.733
Bo4g165540 Brassica oleracea Bo4g165540 N 0.729
Bra011938 Brassica rapa Bra011938 N 0.729
Bra020247 Brassica rapa Bra020247 N 0.729
GLYMA10G10640 Glycine max GLYMA10G10640 N 0.729
GLYMA10G10770 Glycine max GLYMA10G10770 N 0.729
GLYMA10G10900 Glycine max GLYMA10G10900 N 0.729
GLYMA10G11450 Glycine max GLYMA10G11450 N 0.729
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.729
MTR_0121s0080 Medicago truncatula MTR_0121s0080 N 0.729
MTR_3g067875 Medicago truncatula MTR_3g067875 N 0.729
MTR_3g080940 Medicago truncatula MTR_3g080940 N 0.729
PGSC0003DMG400035221 Solanum tuberosum PGSC0003DMG400035221 N 0.729
PGSC0003DMG400036160 Solanum tuberosum PGSC0003DMG400036160 N 0.729
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.729
PGSC0003DMG400043633 Solanum tuberosum PGSC0003DMG400043633 N 0.729
PGSC0003DMG400044387 Solanum tuberosum PGSC0003DMG400044387 N 0.729
PGSC0003DMG400046733 Solanum tuberosum PGSC0003DMG400046733 N 0.729
PRUPE_ppa022494mg Prunus persica PRUPE_ppa022494mg N 0.729
Solyc01g106710.1 Solanum lycopersicum Solyc01g106710.1 N 0.729
TCM_040735 Theobroma cacao TCM_040735 N 0.729
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.729
Ca_07607 Cicer arietinum Ca_07607 N 0.729
Ca_26354 Cicer arietinum Ca_26354 N 0.729
Pm021017 Prunus mume Pm021017 N 0.729
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.729
cassava8711.m1 Manihot esculenta cassava8711.m1 N 0.729
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.729
evm.TU.contig_35157.2 Carica papaya evm.TU.contig_35157.2 N 0.729
evm.TU.contig_38604 Carica papaya evm.TU.contig_38604 N 0.729
evm.TU.supercontig_439.1 Carica papaya evm.TU.supercontig_439.1 N 0.729
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.729
Lus10031073.g Linum usitatissimum Lus10031073.g N 0.729
MDP0000274606 Malus domestica MDP0000274606 N 0.729
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.729
Bo4g070340 Brassica oleracea Bo4g070340 N 0.723
PGSC0003DMG400036190 Solanum tuberosum PGSC0003DMG400036190 N 0.723
evm.TU.contig_41453 Carica papaya evm.TU.contig_41453 N 0.717
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.711
GLYMA10G10610 Glycine max GLYMA10G10610 N 0.708
GLYMA10G10690 Glycine max GLYMA10G10690 N 0.708
GLYMA10G10920 Glycine max GLYMA10G10920 N 0.708
PGSC0003DMG400039835 Solanum tuberosum PGSC0003DMG400039835 N 0.708
PGSC0003DMG400044513 Solanum tuberosum PGSC0003DMG400044513 N 0.708
POPTR_0008s04110 Populus trichocarpa POPTR_0008s04110 N 0.708
POPTR_0009s08740 Populus trichocarpa POPTR_0009s08740 N 0.708
PRUPE_ppa023670mg Prunus persica PRUPE_ppa023670mg N 0.708
Solyc01g060310.1 Solanum lycopersicum Solyc01g060310.1 N 0.708
TCM_006324 Theobroma cacao TCM_006324 N 0.708
Pm016629 Prunus mume Pm016629 N 0.708
27866.m000233 Ricinus communis 27866.m000233 N 0.708
29613.m000367 Ricinus communis 29613.m000367 N 0.708
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.708
Eucgr.H04834 Eucalyptus grandis Eucgr.H04834 N 0.708
evm.TU.contig_33091.3 Carica papaya evm.TU.contig_33091.3 N 0.708
evm.TU.contig_38155.1 Carica papaya evm.TU.contig_38155.1 N 0.708
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.708
evm.TU.supercontig_25.93 Carica papaya evm.TU.supercontig_25.93 I 0.708
evm.TU.supercontig_348.9 Carica papaya evm.TU.supercontig_348.9 N 0.708
gene01788-v1.0-hybrid Fragaria vesca gene01788-v1.0-hybrid I 0.708
MDP0000120467 Malus domestica MDP0000120467 N 0.708
MDP0000168914 Malus domestica MDP0000168914 N 0.708
Thhalv10000432m.g Eutrema salsugineum Thhalv10000432m.g N 0.708
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.708
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.708
chr1.CM0088.830.nc Lotus japonicus chr1.CM0088.830.nc N 0.708
LjSGA_025167.1 Lotus japonicus LjSGA_025167.1 N 0.708
LjSGA_042140.1 Lotus japonicus LjSGA_042140.1 N 0.708
PDK_20s1363011g003 Phoenix dactylifera PDK_20s1363011g003 N 0.708
Bra035685 Brassica rapa Bra035685 N 0.702
PGSC0003DMG400036006 Solanum tuberosum PGSC0003DMG400036006 N 0.702
PGSC0003DMG400046706 Solanum tuberosum PGSC0003DMG400046706 N 0.702
Solyc01g060300.1 Solanum lycopersicum Solyc01g060300.1 N 0.702
evm.TU.contig_37489 Carica papaya evm.TU.contig_37489 N 0.700