CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Thhalv10012100m.g
(
Eutrema salsugineum
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
Thhalv10012100m.g
T259130_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL91
M10922_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT3G66656_01
0.711
0.711
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Thhalv10012100m
MADS box
1
38
TFSKRRSGLFKKVSELCTLCDAEVAIIVHSPSQKVFSF
Links
Other
MADS box
family TFs
Other
Eutrema salsugineum
TFs
242 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Thhalv10015908m.g
Eutrema salsugineum
Thhalv10015908m.g
N
0.947
Al_scaffold_0001_74
Arabidopsis lyrata
Al_scaffold_0001_74
N
0.868
PRUPE_ppa026127mg
Prunus persica
PRUPE_ppa026127mg
N
0.868
Pm021071
Prunus mume
Pm021071
N
0.868
Bostr.5325s0071
Boechera stricta
Bostr.5325s0071
N
0.868
AGL28
Arabidopsis thaliana
AT1G01530
N
0.842
AGL62
Arabidopsis thaliana
AT5G60440
I
0.842
GLYMA20G27341
Glycine max
GLYMA20G27341
N
0.842
POPTR_0017s07460
Populus trichocarpa
POPTR_0017s07460
N
0.842
VIT_03s0088g00590
Vitis vinifera
VIT_03s0088g00590
N
0.842
Ca_04661
Cicer arietinum
Ca_04661
N
0.842
Cla006571
Citrullus lanatus
Cla006571
N
0.842
cassava33542.m1
Manihot esculenta
cassava33542.m1
N
0.842
Cucsa.298560
Cucumis sativus
Cucsa.298560
N
0.842
Bostr.26833s0197
Boechera stricta
Bostr.26833s0197
N
0.842
Cagra.2519s0016
Capsella grandiflora
Cagra.2519s0016
N
0.842
Carubv10028580m.g
Capsella rubella
Carubv10028580m.g
N
0.842
SapurV1A.1313s0050
Salix purpurea
SapurV1A.1313s0050
N
0.842
Al_scaffold_0002_1221
Arabidopsis lyrata
Al_scaffold_0002_1221
N
0.816
AGL62
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_8002041
N
0.816
GLYMA20G27320
Glycine max
GLYMA20G27320
N
0.816
MTR_1g075600
Medicago truncatula
MTR_1g075600
N
0.816
MTR_1g077360
Medicago truncatula
MTR_1g077360
N
0.816
MTR_3g052920
Medicago truncatula
MTR_3g052920
N
0.816
PGSC0003DMG400044387
Solanum tuberosum
PGSC0003DMG400044387
N
0.816
PRUPE_ppa026089mg
Prunus persica
PRUPE_ppa026089mg
N
0.816
Solyc01g106710.1
Solanum lycopersicum
Solyc01g106710.1
N
0.816
TCM_006323
Theobroma cacao
TCM_006323
N
0.816
Ca_04659
Cicer arietinum
Ca_04659
N
0.816
Ca_04660
Cicer arietinum
Ca_04660
N
0.816
Ca_04665
Cicer arietinum
Ca_04665
N
0.816
Pm021018
Prunus mume
Pm021018
N
0.816
30099.m001672
Ricinus communis
30099.m001672
N
0.816
mgf018529m
Mimulus guttatus
mgf018529m
N
0.816
mgf024307m
Mimulus guttatus
mgf024307m
N
0.816
Cagra.1968s0094
Capsella grandiflora
Cagra.1968s0094
N
0.816
Carubv10010156m.g
Capsella rubella
Carubv10010156m.g
N
0.816
evm.TU.contig_35157.1
Carica papaya
evm.TU.contig_35157.1
N
0.816
evm.TU.contig_35713
Carica papaya
evm.TU.contig_35713
N
0.816
evm.TU.contig_35751
Carica papaya
evm.TU.contig_35751
N
0.816
evm.TU.contig_37271
Carica papaya
evm.TU.contig_37271
N
0.816
evm.TU.supercontig_106.20
Carica papaya
evm.TU.supercontig_106.20
N
0.816
evm.TU.supercontig_347.7
Carica papaya
evm.TU.supercontig_347.7
N
0.816
evm.TU.supercontig_348.8
Carica papaya
evm.TU.supercontig_348.8
N
0.816
evm.TU.supercontig_654.6
Carica papaya
evm.TU.supercontig_654.6
N
0.816
Gorai.002G213500
Gossypium raimondii
Gorai.002G213500
N
0.816
Lus10012449.g
Linum usitatissimum
Lus10012449.g
N
0.816
Lus10020511.g
Linum usitatissimum
Lus10020511.g
N
0.816
MDP0000233925
Malus domestica
MDP0000233925
N
0.816
MDP0000278770
Malus domestica
MDP0000278770
N
0.816
SapurV1A.0019s0690
Salix purpurea
SapurV1A.0019s0690
N
0.816
Thhalv10000432m.g
Eutrema salsugineum
Thhalv10000432m.g
N
0.816
Thhalv10022102m.g
Eutrema salsugineum
Thhalv10022102m.g
N
0.816
Bo1g112460
Brassica oleracea
Bo1g112460
N
0.789
Bo4g157220
Brassica oleracea
Bo4g157220
N
0.789
Bra020247
Brassica rapa
Bra020247
N
0.789
Bra038225
Brassica rapa
Bra038225
N
0.789
GLYMA10G40070
Glycine max
GLYMA10G40070
N
0.789
GLYMA20G27330
Glycine max
GLYMA20G27330
N
0.789
MTR_1g012570
Medicago truncatula
MTR_1g012570
N
0.789
MTR_1g105910
Medicago truncatula
MTR_1g105910
N
0.789
MTR_1g105920
Medicago truncatula
MTR_1g105920
N
0.789
MTR_1g108500
Medicago truncatula
MTR_1g108500
N
0.789
MTR_2g030740
Medicago truncatula
MTR_2g030740
N
0.789
MTR_2g085250
Medicago truncatula
MTR_2g085250
N
0.789
MTR_2g085280
Medicago truncatula
MTR_2g085280
N
0.789
MTR_3g052870
Medicago truncatula
MTR_3g052870
N
0.789
MTR_5g045560
Medicago truncatula
MTR_5g045560
N
0.789
MTR_5g053390
Medicago truncatula
MTR_5g053390
N
0.789
MTR_8g043650
Medicago truncatula
MTR_8g043650
N
0.789
PGSC0003DMG400005131
Solanum tuberosum
PGSC0003DMG400005131
N
0.789
POPTR_0009s08750
Populus trichocarpa
POPTR_0009s08750
N
0.789
PRUPE_ppa017246mg
Prunus persica
PRUPE_ppa017246mg
N
0.789
scaffold_400572.1
Arabidopsis lyrata
scaffold_400572.1
N
0.789
Solyc01g106720.1
Solanum lycopersicum
Solyc01g106720.1
N
0.789
Solyc01g106730.1
Solanum lycopersicum
Solyc01g106730.1
N
0.789
TCM_040735
Theobroma cacao
TCM_040735
N
0.789
VIT_03s0088g00510
Vitis vinifera
VIT_03s0088g00510
N
0.789
VIT_03s0088g00600
Vitis vinifera
VIT_03s0088g00600
N
0.789
Pm021070
Prunus mume
Pm021070
N
0.789
cassava21387.m1
Manihot esculenta
cassava21387.m1
N
0.789
Aquca_054_00126
Aquilegia coerulea
Aquca_054_00126
N
0.789
Bostr.8705s0016
Boechera stricta
Bostr.8705s0016
N
0.789
Ciclev10030142m.g
Citrus clementina
Ciclev10030142m.g
N
0.789
evm.TU.contig_24748.4
Carica papaya
evm.TU.contig_24748.4
N
0.789
evm.TU.contig_26687.3
Carica papaya
evm.TU.contig_26687.3
N
0.789
evm.TU.contig_27313
Carica papaya
evm.TU.contig_27313
N
0.789
evm.TU.contig_28241.1
Carica papaya
evm.TU.contig_28241.1
N
0.789
evm.TU.contig_30908.1
Carica papaya
evm.TU.contig_30908.1
N
0.789
evm.TU.contig_33038
Carica papaya
evm.TU.contig_33038
N
0.789
evm.TU.supercontig_106.18
Carica papaya
evm.TU.supercontig_106.18
N
0.789
evm.TU.supercontig_1455.2
Carica papaya
evm.TU.supercontig_1455.2
N
0.789
evm.TU.supercontig_347.11
Carica papaya
evm.TU.supercontig_347.11
N
0.789
evm.TU.supercontig_348.3
Carica papaya
evm.TU.supercontig_348.3
N
0.789
evm.TU.supercontig_348.4
Carica papaya
evm.TU.supercontig_348.4
N
0.789
evm.TU.supercontig_505.4
Carica papaya
evm.TU.supercontig_505.4
N
0.789
evm.TU.supercontig_654.4
Carica papaya
evm.TU.supercontig_654.4
N
0.789
evm.TU.supercontig_695.1
Carica papaya
evm.TU.supercontig_695.1
N
0.789
evm.TU.supercontig_695.7
Carica papaya
evm.TU.supercontig_695.7
N
0.789
evm.TU.supercontig_758.4
Carica papaya
evm.TU.supercontig_758.4
N
0.789
gene01788-v1.0-hybrid
Fragaria vesca
gene01788-v1.0-hybrid
I
0.789
Gorai.005G263100
Gossypium raimondii
Gorai.005G263100
N
0.789
MDP0000168914
Malus domestica
MDP0000168914
N
0.789
orange1.1g039654m.g
Citrus sinensis
orange1.1g039654m.g
N
0.789
SapurV1A.0808s0160
Salix purpurea
SapurV1A.0808s0160
N
0.789
Thhalv10000479m.g
Eutrema salsugineum
Thhalv10000479m.g
N
0.789
Thhalv10003338m.g
Eutrema salsugineum
Thhalv10003338m.g
N
0.789
Thhalv10003426m.g
Eutrema salsugineum
Thhalv10003426m.g
N
0.789
chr1.CM0088.830.nc
Lotus japonicus
chr1.CM0088.830.nc
N
0.789
chr3.CM0279.290.nc
Lotus japonicus
chr3.CM0279.290.nc
N
0.789
AGL61
Arabidopsis lyrata
Al_scaffold_0004_541
N
0.763
AGL61
Arabidopsis thaliana
AT2G24840
N
0.763
Bo5g113750
Brassica oleracea
Bo5g113750
N
0.763
Bo8g099550
Brassica oleracea
Bo8g099550
N
0.763
Bra007829
Brassica rapa
Bra007829
N
0.763
Bra032057
Brassica rapa
Bra032057
N
0.763
GLYMA10G40080
Glycine max
GLYMA10G40080
N
0.763
GLYMA20G27350
Glycine max
GLYMA20G27350
N
0.763
MTR_1g105905
Medicago truncatula
MTR_1g105905
N
0.763
MTR_2g093190
Medicago truncatula
MTR_2g093190
N
0.763
MTR_3g067875
Medicago truncatula
MTR_3g067875
N
0.763
MTR_3g080940
Medicago truncatula
MTR_3g080940
N
0.763
MTR_5g055100
Medicago truncatula
MTR_5g055100
N
0.763
PGSC0003DMG400041035
Solanum tuberosum
PGSC0003DMG400041035
N
0.763
PGSC0003DMG400043633
Solanum tuberosum
PGSC0003DMG400043633
N
0.763
VIT_03s0088g00550
Vitis vinifera
VIT_03s0088g00550
N
0.763
VIT_03s0088g00610
Vitis vinifera
VIT_03s0088g00610
N
0.763
Ca_04658
Cicer arietinum
Ca_04658
N
0.763
Ca_04662
Cicer arietinum
Ca_04662
N
0.763
Ca_07607
Cicer arietinum
Ca_07607
N
0.763
Ca_26354
Cicer arietinum
Ca_26354
N
0.763
29613.m000367
Ricinus communis
29613.m000367
N
0.763
Bostr.7867s1515
Boechera stricta
Bostr.7867s1515
N
0.763
Cagra.1004s0007
Capsella grandiflora
Cagra.1004s0007
N
0.763
Carubv10024914m.g
Capsella rubella
Carubv10024914m.g
N
0.763
Eucgr.H04834
Eucalyptus grandis
Eucgr.H04834
N
0.763
Eucgr.I02506
Eucalyptus grandis
Eucgr.I02506
N
0.763
evm.TU.contig_30005.4
Carica papaya
evm.TU.contig_30005.4
N
0.763
evm.TU.contig_30114.1
Carica papaya
evm.TU.contig_30114.1
N
0.763
evm.TU.contig_41623
Carica papaya
evm.TU.contig_41623
N
0.763
evm.TU.supercontig_1259.1
Carica papaya
evm.TU.supercontig_1259.1
N
0.763
evm.TU.supercontig_20.86
Carica papaya
evm.TU.supercontig_20.86
N
0.763
evm.TU.supercontig_347.8
Carica papaya
evm.TU.supercontig_347.8
N
0.763
evm.TU.supercontig_439.7
Carica papaya
evm.TU.supercontig_439.7
N
0.763
evm.TU.supercontig_505.2
Carica papaya
evm.TU.supercontig_505.2
N
0.763
evm.TU.supercontig_54.68
Carica papaya
evm.TU.supercontig_54.68
N
0.763
evm.TU.supercontig_695.5
Carica papaya
evm.TU.supercontig_695.5
N
0.763
evm.TU.supercontig_758.2
Carica papaya
evm.TU.supercontig_758.2
N
0.763
Gorai.006G127800
Gossypium raimondii
Gorai.006G127800
N
0.763
Lus10031073.g
Linum usitatissimum
Lus10031073.g
N
0.763
SapurV1A.0019s0700
Salix purpurea
SapurV1A.0019s0700
N
0.763
Thhalv10027307m.g
Eutrema salsugineum
Thhalv10027307m.g
N
0.763
chr2.CM0904.120.nd
Lotus japonicus
chr2.CM0904.120.nd
N
0.763
chr5.LjT39E05.40.nd
Lotus japonicus
chr5.LjT39E05.40.nd
N
0.763
LjSGA_067087.1
Lotus japonicus
LjSGA_067087.1
N
0.763
LjSGA_079719.1
Lotus japonicus
LjSGA_079719.1
N
0.763
LjT01D09.100.nd
Lotus japonicus
LjT01D09.100.nd
N
0.763
AGL23
Arabidopsis thaliana
AT1G65360
N
0.737
AT4G36590
Arabidopsis thaliana
AT4G36590
N
0.737
Bo2g024870
Brassica oleracea
Bo2g024870
N
0.737
Bo2g024910
Brassica oleracea
Bo2g024910
N
0.737
Bra002480
Brassica rapa
Bra002480
N
0.737
Bra011938
Brassica rapa
Bra011938
N
0.737
Bra022434
Brassica rapa
Bra022434
N
0.737
fgenesh1_pm.C_scaffold_7000337
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_7000337
N
0.737
GLYMA17G01771
Glycine max
GLYMA17G01771
N
0.737
MTR_0121s0080
Medicago truncatula
MTR_0121s0080
N
0.737
MTR_1g108580
Medicago truncatula
MTR_1g108580
N
0.737
MTR_4g036915
Medicago truncatula
MTR_4g036915
I
0.737
MTR_7g028448
Medicago truncatula
MTR_7g028448
I
0.737
MTR_7g062350
Medicago truncatula
MTR_7g062350
N
0.737
PGSC0003DMG400036160
Solanum tuberosum
PGSC0003DMG400036160
N
0.737
PGSC0003DMG400040625
Solanum tuberosum
PGSC0003DMG400040625
N
0.737
TCM_006324
Theobroma cacao
TCM_006324
N
0.737
VIT_00s0386g00010
Vitis vinifera
VIT_00s0386g00010
N
0.737
VIT_01s0010g01530
Vitis vinifera
VIT_01s0010g01530
N
0.737
Cla010744
Citrullus lanatus
Cla010744
N
0.737
Pm002317
Prunus mume
Pm002317
N
0.737
30099.m001671
Ricinus communis
30099.m001671
N
0.737
cassava41915.m1
Manihot esculenta
cassava41915.m1
N
0.737
Aquca_002_01450
Aquilegia coerulea
Aquca_002_01450
N
0.737
Aquca_015_00242
Aquilegia coerulea
Aquca_015_00242
N
0.737
Aquca_015_00243
Aquilegia coerulea
Aquca_015_00243
N
0.737
Aquca_040_00096
Aquilegia coerulea
Aquca_040_00096
N
0.737
Eucgr.G01185
Eucalyptus grandis
Eucgr.G01185
N
0.737
evm.TU.contig_24748.5
Carica papaya
evm.TU.contig_24748.5
N
0.737
evm.TU.contig_27553.3
Carica papaya
evm.TU.contig_27553.3
N
0.737
evm.TU.supercontig_106.19
Carica papaya
evm.TU.supercontig_106.19
N
0.737
evm.TU.supercontig_347.2
Carica papaya
evm.TU.supercontig_347.2
N
0.737
evm.TU.supercontig_505.5
Carica papaya
evm.TU.supercontig_505.5
N
0.737
Lus10035456.g
Linum usitatissimum
Lus10035456.g
N
0.737
chr5.LjT25B19.190.nd
Lotus japonicus
chr5.LjT25B19.190.nd
N
0.737
LjSGA_020620.1
Lotus japonicus
LjSGA_020620.1
N
0.737
LjSGA_042140.1
Lotus japonicus
LjSGA_042140.1
N
0.737
LjSGA_082681.2
Lotus japonicus
LjSGA_082681.2
N
0.737
LjSGA_120826.2
Lotus japonicus
LjSGA_120826.2
N
0.737
AGL91
Arabidopsis thaliana
AT3G66656
D
0.711
Bo4g165540
Brassica oleracea
Bo4g165540
N
0.711
Bo9g142570
Brassica oleracea
Bo9g142570
N
0.711
Bra020242
Brassica rapa
Bra020242
N
0.711
F775_43210
Aegilops tauschii
F775_43210
I
0.711
AGL91
Arabidopsis lyrata
fgenesh2_kg.3__679__AT3G66656.1
I
0.711
AGL15
Arabidopsis lyrata
fgenesh2_kg.6__1336__AT5G13790.1
I
0.711
GLYMA10G40060
Glycine max
GLYMA10G40060
N
0.711
GLYMA20G27361
Glycine max
GLYMA20G27361
N
0.711
PGSC0003DMG400046706
Solanum tuberosum
PGSC0003DMG400046706
N
0.711
POPTR_0004s13590
Populus trichocarpa
POPTR_0004s13590
N
0.711
POPTR_0009s08740
Populus trichocarpa
POPTR_0009s08740
N
0.711
PRUPE_ppa023670mg
Prunus persica
PRUPE_ppa023670mg
N
0.711
PRUPE_ppb022733mg
Prunus persica
PRUPE_ppb022733mg
N
0.711
TCM_029518
Theobroma cacao
TCM_029518
I
0.711
Traes_6DL_609A01BD5
Triticum aestivum
Traes_6DL_609A01BD5
I
0.711
VIT_02s0025g04650
Vitis vinifera
VIT_02s0025g04650
I
0.711
Pm016629
Prunus mume
Pm016629
N
0.711
29693.m002042
Ricinus communis
29693.m002042
N
0.711
cassava21573.m1
Manihot esculenta
cassava21573.m1
N
0.711
cassava9834.m1
Manihot esculenta
cassava9834.m1
N
0.711
Cucsa.342610
Cucumis sativus
Cucsa.342610
N
0.711
mgf022625m
Mimulus guttatus
mgf022625m
N
0.711
mgf024454m
Mimulus guttatus
mgf024454m
N
0.711
Aquca_005_00477
Aquilegia coerulea
Aquca_005_00477
N
0.711
Aquca_041_00050
Aquilegia coerulea
Aquca_041_00050
N
0.711
Bostr.2902s0113
Boechera stricta
Bostr.2902s0113
I
0.711
Cagra.0133s0015
Capsella grandiflora
Cagra.0133s0015
I
0.711
Cagra.1695s0023
Capsella grandiflora
Cagra.1695s0023
N
0.711
Carubv10007644m.g
Capsella rubella
Carubv10007644m.g
N
0.711
Carubv10014761m.g
Capsella rubella
Carubv10014761m.g
I
0.711
evm.TU.supercontig_20.85
Carica papaya
evm.TU.supercontig_20.85
N
0.711
evm.TU.supercontig_654.5
Carica papaya
evm.TU.supercontig_654.5
N
0.711
evm.TU.supercontig_758.1
Carica papaya
evm.TU.supercontig_758.1
N
0.711
evm.TU.supercontig_851.1
Carica papaya
evm.TU.supercontig_851.1
N
0.711
gene07364-v1.0-hybrid
Fragaria vesca
gene07364-v1.0-hybrid
N
0.711
gene30567-v1.0-hybrid
Fragaria vesca
gene30567-v1.0-hybrid
I
0.711
Gorai.010G165500
Gossypium raimondii
Gorai.010G165500
I
0.711
Lus10030663.g
Linum usitatissimum
Lus10030663.g
N
0.711
Lus10030824.g
Linum usitatissimum
Lus10030824.g
N
0.711
Thhalv10003315m.g
Eutrema salsugineum
Thhalv10003315m.g
N
0.711
Thhalv10017754m.g
Eutrema salsugineum
Thhalv10017754m.g
N
0.711
Thhalv10022154m.g
Eutrema salsugineum
Thhalv10022154m.g
I
0.711
chr1.LjB17A22.60.nc
Lotus japonicus
chr1.LjB17A22.60.nc
N
0.711
chr2.CM0250.170.nc
Lotus japonicus
chr2.CM0250.170.nc
N
0.711
chr5.LjT25B19.200.nd
Lotus japonicus
chr5.LjT25B19.200.nd
N
0.711