MTR_7g028448 (Medicago truncatula)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 MTR_7g028448 T254816_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SVP
M06984_2.00 		Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH		 Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b 		0.708 0.708
SVP
M06985_2.00 		Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG		 Dap-seq
OMalley et al.(2016)
SVP_col_v3b 		0.708 0.708
SVP
M08424_2.00 		Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN		 ChIP-chip
Mathelier et al.(2014)
MA0555.1 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KEH21963 MADS box 20 67

Links

Other MADS box family TFs
Other Medicago truncatula TFs

59 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MTR_4g036915 Medicago truncatula MTR_4g036915 I 1.000
GLYMA17G01771 Glycine max GLYMA17G01771 N 0.792
GLYMA20G27361 Glycine max GLYMA20G27361 N 0.771
MTR_4g127140 Medicago truncatula MTR_4g127140 N 0.771
Traes_7DS_366A869CF Triticum aestivum Traes_7DS_366A869CF I 0.756
MTR_2g105290 Medicago truncatula MTR_2g105290 N 0.750
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.737
Bo4g149800 Brassica oleracea Bo4g149800 I 0.729
Bra030228 Brassica rapa Bra030228 I 0.729
MTR_2g030740 Medicago truncatula MTR_2g030740 N 0.729
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.729
Ca_04658 Cicer arietinum Ca_04658 N 0.729
Ca_18845 Cicer arietinum Ca_18845 N 0.729
Cucsa.342610 Cucumis sativus Cucsa.342610 N 0.729
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.729
LjT38P01.180.nd Lotus japonicus LjT38P01.180.nd I 0.729
SVP Arabidopsis thaliana AT2G22540 D 0.708
AGL62 Arabidopsis thaliana AT5G60440 I 0.708
Bo8g101000 Brassica oleracea Bo8g101000 I 0.708
Bra038511 Brassica rapa Bra038511 I 0.708
SVP Arabidopsis lyrata fgenesh2_kg.4__174__AT2G22540.1 I 0.708
GLYMA11G16105 Glycine max GLYMA11G16105 I 0.708
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.708
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.708
GSMUA_Achr3G06800_001 Musa acuminata GSMUA_Achr3G06800_001 I 0.708
GSMUA_Achr9G15180_001 Musa acuminata GSMUA_Achr9G15180_001 I 0.708
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.708
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.708
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.708
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.708
MTR_1g108510 Medicago truncatula MTR_1g108510 N 0.708
MTR_1g108580 Medicago truncatula MTR_1g108580 N 0.708
MTR_3g030770 Medicago truncatula MTR_3g030770 N 0.708
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.708
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.708
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.708
MTR_8g086290 Medicago truncatula MTR_8g086290 N 0.708
POPTR_0007s14300 Populus trichocarpa POPTR_0007s14300 I 0.708
Sb01g049020 Sorghum bicolor Sb01g049020 I 0.708
SVP Vitis vinifera VIT_00s0313g00070 I 0.708
Ca_04665 Cicer arietinum Ca_04665 N 0.708
Ca_07607 Cicer arietinum Ca_07607 N 0.708
Ca_26354 Cicer arietinum Ca_26354 N 0.708
Cla010744 Citrullus lanatus Cla010744 N 0.708
Aquca_054_00126 Aquilegia coerulea Aquca_054_00126 N 0.708
Bostr.19427s0024 Boechera stricta Bostr.19427s0024 I 0.708
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.708
Cagra.1080s0011 Capsella grandiflora Cagra.1080s0011 I 0.708
Carubv10023941m.g Capsella rubella Carubv10023941m.g I 0.708
Eucgr.I00556 Eucalyptus grandis Eucgr.I00556 I 0.708
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.708
Lus10025719.g Linum usitatissimum Lus10025719.g I 0.708
Lus10035942.g Linum usitatissimum Lus10035942.g I 0.708
SapurV1A.1777s0020 Salix purpurea SapurV1A.1777s0020 I 0.708
Thhalv10000308m.g Eutrema salsugineum Thhalv10000308m.g I 0.708
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.708
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.708
Thhalv10027307m.g Eutrema salsugineum Thhalv10027307m.g N 0.708
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.708