CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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evm.TU.supercontig_20.85
(
Carica papaya
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
evm.TU.supercontig_20.85
T258198_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
evm.model.supercontig_20.85
MADS box
27
74
ELQNKNARQVTFSKRRTGLFKKASELCVLCGAEIAIIAFSPNDKPFTF
Links
Other
MADS box
family TFs
Other
Carica papaya
TFs
40 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cla010744
Citrullus lanatus
Cla010744
N
0.729
Cucsa.342610
Cucumis sativus
Cucsa.342610
N
0.729
Thhalv10000479m.g
Eutrema salsugineum
Thhalv10000479m.g
N
0.729
Thhalv10003338m.g
Eutrema salsugineum
Thhalv10003338m.g
N
0.729
TCM_006325
Theobroma cacao
TCM_006325
N
0.729
Bostr.8705s0016
Boechera stricta
Bostr.8705s0016
N
0.729
Thhalv10012100m.g
Eutrema salsugineum
Thhalv10012100m.g
I
0.711
evm.TU.supercontig_20.86
Carica papaya
evm.TU.supercontig_20.86
N
0.708
gene01789-v1.0-hybrid
Fragaria vesca
gene01789-v1.0-hybrid
N
0.708
evm.TU.contig_27313
Carica papaya
evm.TU.contig_27313
N
0.708
Eucgr.G01185
Eucalyptus grandis
Eucgr.G01185
N
0.708
Ciclev10030142m.g
Citrus clementina
Ciclev10030142m.g
N
0.708
Gorai.012G163200
Gossypium raimondii
Gorai.012G163200
N
0.708
Carubv10028580m.g
Capsella rubella
Carubv10028580m.g
N
0.708
MDP0000168914
Malus domestica
MDP0000168914
N
0.708
Thhalv10022102m.g
Eutrema salsugineum
Thhalv10022102m.g
N
0.708
chr1.CM0088.830.nc
Lotus japonicus
chr1.CM0088.830.nc
N
0.708
AGL61
Arabidopsis thaliana
AT2G24840
N
0.708
Bo5g113750
Brassica oleracea
Bo5g113750
N
0.708
Solyc01g106710.1
Solanum lycopersicum
Solyc01g106710.1
N
0.708
orange1.1g039654m.g
Citrus sinensis
orange1.1g039654m.g
N
0.708
Gorai.N026300
Gossypium raimondii
Gorai.N026300
N
0.708
Carubv10024914m.g
Capsella rubella
Carubv10024914m.g
N
0.708
PRUPE_ppa026089mg
Prunus persica
PRUPE_ppa026089mg
N
0.708
Pm021018
Prunus mume
Pm021018
N
0.708
Cucsa.298560
Cucumis sativus
Cucsa.298560
N
0.708
Cla006571
Citrullus lanatus
Cla006571
N
0.708
scaffold_400572.1
Arabidopsis lyrata
scaffold_400572.1
N
0.708
Solyc01g106730.1
Solanum lycopersicum
Solyc01g106730.1
N
0.708
TCM_006323
Theobroma cacao
TCM_006323
N
0.708
Cagra.2519s0016
Capsella grandiflora
Cagra.2519s0016
N
0.708
PGSC0003DMG400044387
Solanum tuberosum
PGSC0003DMG400044387
N
0.708
AGL61
Arabidopsis lyrata
Al_scaffold_0004_541
N
0.708
Cagra.1004s0007
Capsella grandiflora
Cagra.1004s0007
N
0.708
Bostr.26833s0197
Boechera stricta
Bostr.26833s0197
N
0.708
Aquca_054_00126
Aquilegia coerulea
Aquca_054_00126
N
0.708
mgf018529m
Mimulus guttatus
mgf018529m
N
0.708
mgf024307m
Mimulus guttatus
mgf024307m
N
0.708
orange1.1g045249m.g
Citrus sinensis
orange1.1g045249m.g
N
0.702
Ciclev10030327m.g
Citrus clementina
Ciclev10030327m.g
N
0.702