scaffold_400572.1 (Arabidopsis lyrata)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 scaffold_400572.1 T256117_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_400572.1 MADS box 10 58

Links

Other MADS box family TFs
Other Arabidopsis lyrata TFs

222 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.958
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.958
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.958
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.938
AGL61 Arabidopsis thaliana AT2G24840 N 0.938
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.938
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.938
Bo8g099550 Brassica oleracea Bo8g099550 N 0.896
Bra007829 Brassica rapa Bra007829 N 0.896
Bra026764 Brassica rapa Bra026764 N 0.875
Bra032057 Brassica rapa Bra032057 N 0.875
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.875
Bo4g157220 Brassica oleracea Bo4g157220 N 0.854
29613.m000367 Ricinus communis 29613.m000367 N 0.854
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.833
Pm021070 Prunus mume Pm021070 N 0.833
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.833
SapurV1A.0019s0700 Salix purpurea SapurV1A.0019s0700 N 0.833
chr1.CM0088.830.nc Lotus japonicus chr1.CM0088.830.nc N 0.833
evm.TU.contig_35697 Carica papaya evm.TU.contig_35697 N 0.821
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.812
MTR_3g080940 Medicago truncatula MTR_3g080940 N 0.812
POPTR_0008s04110 Populus trichocarpa POPTR_0008s04110 N 0.812
TCM_006323 Theobroma cacao TCM_006323 N 0.812
Ca_07607 Cicer arietinum Ca_07607 N 0.812
Ca_26354 Cicer arietinum Ca_26354 N 0.812
30099.m001671 Ricinus communis 30099.m001671 N 0.812
cassava41915.m1 Manihot esculenta cassava41915.m1 N 0.812
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.812
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.812
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.812
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.812
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.812
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.812
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.812
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.812
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.812
Lus10030824.g Linum usitatissimum Lus10030824.g N 0.812
MDP0000168914 Malus domestica MDP0000168914 N 0.812
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.812
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.792
PGSC0003DMG400044387 Solanum tuberosum PGSC0003DMG400044387 N 0.792
POPTR_0009s08740 Populus trichocarpa POPTR_0009s08740 N 0.792
Solyc01g106710.1 Solanum lycopersicum Solyc01g106710.1 N 0.792
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.792
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.792
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.792
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.792
Cla006571 Citrullus lanatus Cla006571 N 0.792
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.792
mgf018529m Mimulus guttatus mgf018529m N 0.792
mgf024307m Mimulus guttatus mgf024307m N 0.792
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.792
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.792
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.792
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.792
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.792
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.792
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.792
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.792
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.792
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.792
evm.TU.supercontig_347.8 Carica papaya evm.TU.supercontig_347.8 N 0.792
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.792
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.792
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.792
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.792
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.792
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.792
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.792
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.792
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.792
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.792
Lus10030663.g Linum usitatissimum Lus10030663.g N 0.792
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.792
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.792
LjSGA_042140.1 Lotus japonicus LjSGA_042140.1 N 0.792
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.789
AGL62 Arabidopsis thaliana AT5G60440 I 0.771
GLYMA10G40060 Glycine max GLYMA10G40060 N 0.771
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.771
PRUPE_ppa023670mg Prunus persica PRUPE_ppa023670mg N 0.771
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.771
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.771
scaffold_302326.1 Arabidopsis lyrata scaffold_302326.1 I 0.771
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.771
Pm016629 Prunus mume Pm016629 N 0.771
Pm021018 Prunus mume Pm021018 N 0.771
Pm021071 Prunus mume Pm021071 N 0.771
30099.m001672 Ricinus communis 30099.m001672 N 0.771
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.771
Aquca_054_00126 Aquilegia coerulea Aquca_054_00126 N 0.771
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.771
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.771
Eucgr.H04834 Eucalyptus grandis Eucgr.H04834 N 0.771
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.771
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.771
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N 0.771
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.771
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.771
evm.TU.supercontig_1259.1 Carica papaya evm.TU.supercontig_1259.1 N 0.771
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N 0.771
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.771
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.771
gene01788-v1.0-hybrid Fragaria vesca gene01788-v1.0-hybrid I 0.771
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.771
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.771
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.771
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.771
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.750
Al_scaffold_0002_1221 Arabidopsis lyrata Al_scaffold_0002_1221 N 0.750
AGL23 Arabidopsis thaliana AT1G65360 N 0.750
Bo1g112460 Brassica oleracea Bo1g112460 N 0.750
Bo5g113750 Brassica oleracea Bo5g113750 N 0.750
fgenesh1_pm.C_scaffold_7000337 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000337 N 0.750
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.750
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.750
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.750
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.750
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.750
PGSC0003DMG400043633 Solanum tuberosum PGSC0003DMG400043633 N 0.750
POPTR_0007s03410 Populus trichocarpa POPTR_0007s03410 N 0.750
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.750
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.750
TCM_006325 Theobroma cacao TCM_006325 N 0.750
TCM_040735 Theobroma cacao TCM_040735 N 0.750
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.750
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.750
VIT_03s0088g00610 Vitis vinifera VIT_03s0088g00610 N 0.750
29838.m001672 Ricinus communis 29838.m001672 N 0.750
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.750
Aquca_015_00242 Aquilegia coerulea Aquca_015_00242 N 0.750
Aquca_015_00243 Aquilegia coerulea Aquca_015_00243 N 0.750
Ciclev10030387m.g Citrus clementina Ciclev10030387m.g N 0.750
evm.TU.contig_35157.1 Carica papaya evm.TU.contig_35157.1 N 0.750
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.750
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.750
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.750
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.750
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.750
MDP0000221590 Malus domestica MDP0000221590 N 0.750
MDP0000434703 Malus domestica MDP0000434703 I 0.750
orange1.1g036705m.g Citrus sinensis orange1.1g036705m.g N 0.750
SapurV1A.1128s0080 Salix purpurea SapurV1A.1128s0080 N 0.750
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.750
Thhalv10000432m.g Eutrema salsugineum Thhalv10000432m.g N 0.750
Thhalv10015908m.g Eutrema salsugineum Thhalv10015908m.g N 0.750
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N 0.750
chr5.LjT25B19.190.nd Lotus japonicus chr5.LjT25B19.190.nd N 0.750
PGSC0003DMG400036006 Solanum tuberosum PGSC0003DMG400036006 N 0.745
AGL28 Arabidopsis thaliana AT1G01530 N 0.729
AT4G36590 Arabidopsis thaliana AT4G36590 N 0.729
Bra022434 Brassica rapa Bra022434 N 0.729
Bra038225 Brassica rapa Bra038225 N 0.729
F775_04223 Aegilops tauschii F775_04223 I 0.729
GLYMA20G27320 Glycine max GLYMA20G27320 N 0.729
GLYMA20G27341 Glycine max GLYMA20G27341 N 0.729
GSMUA_Achr5G26530_001 Musa acuminata GSMUA_Achr5G26530_001 I 0.729
GSMUA_Achr8G07230_001 Musa acuminata GSMUA_Achr8G07230_001 I 0.729
MTR_2g030740 Medicago truncatula MTR_2g030740 N 0.729
MTR_2g085250 Medicago truncatula MTR_2g085250 N 0.729
MTR_2g085280 Medicago truncatula MTR_2g085280 N 0.729
MTR_5g055100 Medicago truncatula MTR_5g055100 N 0.729
PGSC0003DMG400036160 Solanum tuberosum PGSC0003DMG400036160 N 0.729
POPTR_0007s03430 Populus trichocarpa POPTR_0007s03430 N 0.729
PRUPE_ppa024816mg Prunus persica PRUPE_ppa024816mg I 0.729
TRAES3BF106100060CFD_g Triticum aestivum TRAES3BF106100060CFD_g I 0.729
Ca_04659 Cicer arietinum Ca_04659 N 0.729
Ca_04660 Cicer arietinum Ca_04660 N 0.729
Ca_04665 Cicer arietinum Ca_04665 N 0.729
Pm030655 Prunus mume Pm030655 I 0.729
cassava21573.m1 Manihot esculenta cassava21573.m1 N 0.729
cassava8711.m1 Manihot esculenta cassava8711.m1 N 0.729
Aquca_040_00096 Aquilegia coerulea Aquca_040_00096 N 0.729
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.729
Ciclev10013802m.g Citrus clementina Ciclev10013802m.g N 0.729
Eucgr.G01185 Eucalyptus grandis Eucgr.G01185 N 0.729
evm.TU.contig_31285.2 Carica papaya evm.TU.contig_31285.2 N 0.729
evm.TU.supercontig_505.6 Carica papaya evm.TU.supercontig_505.6 N 0.729
evm.TU.supercontig_851.1 Carica papaya evm.TU.supercontig_851.1 N 0.729
Gorai.012G163200 Gossypium raimondii Gorai.012G163200 N 0.729
Gorai.N026300 Gossypium raimondii Gorai.N026300 N 0.729
MDP0000233925 Malus domestica MDP0000233925 N 0.729
MDP0000278770 Malus domestica MDP0000278770 N 0.729
orange1.1g045481m.g Citrus sinensis orange1.1g045481m.g N 0.729
Thhalv10027307m.g Eutrema salsugineum Thhalv10027307m.g N 0.729
evm.TU.contig_27553.5 Carica papaya evm.TU.contig_27553.5 N 0.723
evm.TU.contig_47064.2 Carica papaya evm.TU.contig_47064.2 N 0.723
evm.TU.contig_41453 Carica papaya evm.TU.contig_41453 N 0.717
evm.TU.contig_33091.2 Carica papaya evm.TU.contig_33091.2 N 0.714
Bo4g165540 Brassica oleracea Bo4g165540 N 0.708
Bra002480 Brassica rapa Bra002480 N 0.708
GLYMA10G40080 Glycine max GLYMA10G40080 N 0.708
GLYMA17G01771 Glycine max GLYMA17G01771 N 0.708
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.708
GLYMA20G27361 Glycine max GLYMA20G27361 N 0.708
MTR_1g012570 Medicago truncatula MTR_1g012570 N 0.708
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.708
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.708
MTR_1g108510 Medicago truncatula MTR_1g108510 N 0.708
MTR_2g093190 Medicago truncatula MTR_2g093190 N 0.708
MTR_3g030770 Medicago truncatula MTR_3g030770 N 0.708
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.708
MTR_5g045560 Medicago truncatula MTR_5g045560 N 0.708
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.708
Sb0836s002010 Sorghum bicolor Sb0836s002010 N 0.708
TCM_029518 Theobroma cacao TCM_029518 I 0.708
Ca_04661 Cicer arietinum Ca_04661 N 0.708
Ca_04662 Cicer arietinum Ca_04662 N 0.708
Cla010744 Citrullus lanatus Cla010744 N 0.708
29693.m002039 Ricinus communis 29693.m002039 I 0.708
Cucsa.342610 Cucumis sativus Cucsa.342610 N 0.708
mgf021403m Mimulus guttatus mgf021403m N 0.708
mgf023207m Mimulus guttatus mgf023207m N 0.708
Aquca_002_01450 Aquilegia coerulea Aquca_002_01450 N 0.708
Eucgr.I02506 Eucalyptus grandis Eucgr.I02506 N 0.708
evm.TU.contig_43014 Carica papaya evm.TU.contig_43014 N 0.708
evm.TU.supercontig_20.85 Carica papaya evm.TU.supercontig_20.85 N 0.708
evm.TU.supercontig_439.1 Carica papaya evm.TU.supercontig_439.1 N 0.708
MDP0000274606 Malus domestica MDP0000274606 N 0.708
LjSGA_025167.1 Lotus japonicus LjSGA_025167.1 N 0.708
POPTR_0016s12650 Populus trichocarpa POPTR_0016s12650 N 0.702