POPTR_0007s03410 (Populus trichocarpa)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 POPTR_0007s03410 T255837_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0007s03410.1 MADS box 22 49

Links

Other MADS box family TFs
Other Populus trichocarpa TFs

52 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.821
Pm021071 Prunus mume Pm021071 N 0.821
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.821
evm.TU.contig_35697 Carica papaya evm.TU.contig_35697 N 0.821
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.821
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.821
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.786
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.786
TCM_006323 Theobroma cacao TCM_006323 N 0.786
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.786
Pm021018 Prunus mume Pm021018 N 0.786
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.786
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.786
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.786
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.786
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.786
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.750
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.750
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.750
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.750
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.750
Ca_04659 Cicer arietinum Ca_04659 N 0.750
Ca_04660 Cicer arietinum Ca_04660 N 0.750
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.750
evm.TU.contig_33091.2 Carica papaya evm.TU.contig_33091.2 N 0.750
evm.TU.contig_35157.1 Carica papaya evm.TU.contig_35157.1 N 0.750
evm.TU.contig_43014 Carica papaya evm.TU.contig_43014 N 0.750
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.750
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.750
MDP0000233925 Malus domestica MDP0000233925 N 0.750
MDP0000278770 Malus domestica MDP0000278770 N 0.750
Bra022434 Brassica rapa Bra022434 N 0.714
Bra038225 Brassica rapa Bra038225 N 0.714
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.714
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.714
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.714
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.714
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.714
POPTR_0017s06810 Populus trichocarpa POPTR_0017s06810 N 0.714
Ca_05023 Cicer arietinum Ca_05023 I 0.714
29613.m000367 Ricinus communis 29613.m000367 N 0.714
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.714
Aquca_054_00126 Aquilegia coerulea Aquca_054_00126 N 0.714
evm.TU.contig_26687.1 Carica papaya evm.TU.contig_26687.1 N 0.714
evm.TU.contig_28241.3 Carica papaya evm.TU.contig_28241.3 N 0.714
evm.TU.contig_35176.1 Carica papaya evm.TU.contig_35176.1 N 0.714
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.714
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.714
evm.TU.supercontig_758.1 Carica papaya evm.TU.supercontig_758.1 N 0.714
gene07364-v1.0-hybrid Fragaria vesca gene07364-v1.0-hybrid N 0.714
MDP0000168914 Malus domestica MDP0000168914 N 0.714
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N 0.714