cassava21387.m1 (Manihot esculenta)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 cassava21387.m1 T257192_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
cassava21387.m1 MADS box 15 62

Links

Other MADS box family TFs
Other Manihot esculenta TFs

224 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava21573.m1 Manihot esculenta cassava21573.m1 N 0.896
cassava8711.m1 Manihot esculenta cassava8711.m1 N 0.896
29838.m001672 Ricinus communis 29838.m001672 N 0.833
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.833
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.833
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.812
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.812
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.812
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.812
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.812
Cla006571 Citrullus lanatus Cla006571 N 0.812
30099.m001672 Ricinus communis 30099.m001672 N 0.812
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.812
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.812
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.812
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.812
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.812
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.812
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.812
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.812
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.812
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.812
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.812
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.812
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.812
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.812
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.792
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.792
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.792
POPTR_0007s03430 Populus trichocarpa POPTR_0007s03430 N 0.792
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.792
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.792
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.792
TCM_006323 Theobroma cacao TCM_006323 N 0.792
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.792
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.792
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.792
Pm021070 Prunus mume Pm021070 N 0.792
Pm021071 Prunus mume Pm021071 N 0.792
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.792
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.792
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.792
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.792
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.792
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.792
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.792
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.792
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.792
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.792
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.792
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.792
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.792
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.792
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.792
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.792
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.792
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.792
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.792
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.792
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.792
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.792
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.792
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.792
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.792
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.789
Al_scaffold_0002_1221 Arabidopsis lyrata Al_scaffold_0002_1221 N 0.771
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.771
AGL28 Arabidopsis thaliana AT1G01530 N 0.771
AGL61 Arabidopsis thaliana AT2G24840 N 0.771
AGL62 Arabidopsis thaliana AT5G60440 I 0.771
MTR_2g030740 Medicago truncatula MTR_2g030740 N 0.771
MTR_2g085250 Medicago truncatula MTR_2g085250 N 0.771
MTR_2g085280 Medicago truncatula MTR_2g085280 N 0.771
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.771
MTR_5g055100 Medicago truncatula MTR_5g055100 N 0.771
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.771
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.771
29613.m000367 Ricinus communis 29613.m000367 N 0.771
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.771
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.771
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.771
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.771
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.771
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N 0.771
evm.TU.contig_35157.1 Carica papaya evm.TU.contig_35157.1 N 0.771
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.771
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.771
evm.TU.supercontig_347.8 Carica papaya evm.TU.supercontig_347.8 N 0.771
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N 0.771
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.771
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.771
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.771
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.771
MDP0000168914 Malus domestica MDP0000168914 N 0.771
MDP0000221590 Malus domestica MDP0000221590 N 0.771
MDP0000434703 Malus domestica MDP0000434703 I 0.771
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.771
chr1.CM0088.830.nc Lotus japonicus chr1.CM0088.830.nc N 0.771
AGL23 Arabidopsis thaliana AT1G65360 N 0.750
AT4G36590 Arabidopsis thaliana AT4G36590 N 0.750
Bo1g112460 Brassica oleracea Bo1g112460 N 0.750
Bo5g113750 Brassica oleracea Bo5g113750 N 0.750
Bra002480 Brassica rapa Bra002480 N 0.750
fgenesh1_pm.C_scaffold_7000337 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000337 N 0.750
GLYMA20G27320 Glycine max GLYMA20G27320 N 0.750
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.750
MTR_1g108510 Medicago truncatula MTR_1g108510 N 0.750
MTR_3g030770 Medicago truncatula MTR_3g030770 N 0.750
MTR_3g080940 Medicago truncatula MTR_3g080940 N 0.750
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.750
PGSC0003DMG400044387 Solanum tuberosum PGSC0003DMG400044387 N 0.750
POPTR_0007s03410 Populus trichocarpa POPTR_0007s03410 N 0.750
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.750
scaffold_302326.1 Arabidopsis lyrata scaffold_302326.1 I 0.750
Solyc01g106710.1 Solanum lycopersicum Solyc01g106710.1 N 0.750
TCM_040735 Theobroma cacao TCM_040735 N 0.750
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.750
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.750
Ca_04659 Cicer arietinum Ca_04659 N 0.750
Ca_04660 Cicer arietinum Ca_04660 N 0.750
Ca_04661 Cicer arietinum Ca_04661 N 0.750
Ca_04665 Cicer arietinum Ca_04665 N 0.750
Ca_07607 Cicer arietinum Ca_07607 N 0.750
Ca_26354 Cicer arietinum Ca_26354 N 0.750
Pm021018 Prunus mume Pm021018 N 0.750
mgf018529m Mimulus guttatus mgf018529m N 0.750
mgf024307m Mimulus guttatus mgf024307m N 0.750
Cagra.1968s0094 Capsella grandiflora Cagra.1968s0094 N 0.750
Carubv10010156m.g Capsella rubella Carubv10010156m.g N 0.750
Ciclev10013802m.g Citrus clementina Ciclev10013802m.g N 0.750
Ciclev10030387m.g Citrus clementina Ciclev10030387m.g N 0.750
evm.TU.contig_33091.2 Carica papaya evm.TU.contig_33091.2 N 0.750
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.750
evm.TU.supercontig_1259.1 Carica papaya evm.TU.supercontig_1259.1 N 0.750
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.750
evm.TU.supercontig_505.6 Carica papaya evm.TU.supercontig_505.6 N 0.750
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.750
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.750
MDP0000233925 Malus domestica MDP0000233925 N 0.750
MDP0000278770 Malus domestica MDP0000278770 N 0.750
orange1.1g036705m.g Citrus sinensis orange1.1g036705m.g N 0.750
orange1.1g045481m.g Citrus sinensis orange1.1g045481m.g N 0.750
SapurV1A.0808s0160 Salix purpurea SapurV1A.0808s0160 N 0.750
Thhalv10015908m.g Eutrema salsugineum Thhalv10015908m.g N 0.750
chr2.CM0250.170.nc Lotus japonicus chr2.CM0250.170.nc N 0.750
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N 0.750
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.750
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.750
Bo8g099550 Brassica oleracea Bo8g099550 N 0.729
Bo9g142570 Brassica oleracea Bo9g142570 N 0.729
Bra007829 Brassica rapa Bra007829 N 0.729
Bra022434 Brassica rapa Bra022434 N 0.729
Bra026764 Brassica rapa Bra026764 N 0.729
Bra038225 Brassica rapa Bra038225 N 0.729
GLYMA10G10610 Glycine max GLYMA10G10610 N 0.729
GLYMA10G10840 Glycine max GLYMA10G10840 N 0.729
GLYMA10G10860 Glycine max GLYMA10G10860 N 0.729
GLYMA10G10930 Glycine max GLYMA10G10930 N 0.729
GLYMA10G40060 Glycine max GLYMA10G40060 N 0.729
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.729
GLYMA20G27341 Glycine max GLYMA20G27341 N 0.729
MTR_1g012570 Medicago truncatula MTR_1g012570 N 0.729
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.729
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.729
MTR_1g108580 Medicago truncatula MTR_1g108580 N 0.729
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.729
MTR_5g045560 Medicago truncatula MTR_5g045560 N 0.729
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.729
PGSC0003DMG400036160 Solanum tuberosum PGSC0003DMG400036160 N 0.729
POPTR_0008s04110 Populus trichocarpa POPTR_0008s04110 N 0.729
PRUPE_ppa023670mg Prunus persica PRUPE_ppa023670mg N 0.729
VIT_03s0088g00610 Vitis vinifera VIT_03s0088g00610 N 0.729
Pm016629 Prunus mume Pm016629 N 0.729
30099.m001671 Ricinus communis 30099.m001671 N 0.729
cassava41915.m1 Manihot esculenta cassava41915.m1 N 0.729
Eucgr.H04834 Eucalyptus grandis Eucgr.H04834 N 0.729
Eucgr.I02506 Eucalyptus grandis Eucgr.I02506 N 0.729
evm.TU.supercontig_851.1 Carica papaya evm.TU.supercontig_851.1 N 0.729
gene01788-v1.0-hybrid Fragaria vesca gene01788-v1.0-hybrid I 0.729
Lus10030824.g Linum usitatissimum Lus10030824.g N 0.729
Lus10031073.g Linum usitatissimum Lus10031073.g N 0.729
SapurV1A.0019s0700 Salix purpurea SapurV1A.0019s0700 N 0.729
Thhalv10017754m.g Eutrema salsugineum Thhalv10017754m.g N 0.729
Thhalv10027307m.g Eutrema salsugineum Thhalv10027307m.g N 0.729
chr1.LjB17A22.60.nc Lotus japonicus chr1.LjB17A22.60.nc N 0.729
chr2.CM0904.120.nd Lotus japonicus chr2.CM0904.120.nd N 0.729
chr5.LjT25B19.190.nd Lotus japonicus chr5.LjT25B19.190.nd N 0.729
LjSGA_042140.1 Lotus japonicus LjSGA_042140.1 N 0.729
PGSC0003DMG400036006 Solanum tuberosum PGSC0003DMG400036006 N 0.723
evm.TU.contig_27553.5 Carica papaya evm.TU.contig_27553.5 N 0.723
evm.TU.contig_47064.2 Carica papaya evm.TU.contig_47064.2 N 0.723
Bo2g024910 Brassica oleracea Bo2g024910 N 0.708
Bo4g165540 Brassica oleracea Bo4g165540 N 0.708
Bra020247 Brassica rapa Bra020247 N 0.708
Bra032057 Brassica rapa Bra032057 N 0.708
GLYMA10G10640 Glycine max GLYMA10G10640 N 0.708
GLYMA10G10770 Glycine max GLYMA10G10770 N 0.708
GLYMA10G10900 Glycine max GLYMA10G10900 N 0.708
GLYMA10G11450 Glycine max GLYMA10G11450 N 0.708
GLYMA10G40080 Glycine max GLYMA10G40080 N 0.708
GLYMA13G39016 Glycine max GLYMA13G39016 N 0.708
MTR_2g093190 Medicago truncatula MTR_2g093190 N 0.708
MTR_5g053390 Medicago truncatula MTR_5g053390 N 0.708
PGSC0003DMG400043633 Solanum tuberosum PGSC0003DMG400043633 N 0.708
PGSC0003DMG400045239 Solanum tuberosum PGSC0003DMG400045239 N 0.708
POPTR_0009s08740 Populus trichocarpa POPTR_0009s08740 N 0.708
Ca_04662 Cicer arietinum Ca_04662 N 0.708
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.708
Eucgr.G01185 Eucalyptus grandis Eucgr.G01185 N 0.708
evm.TU.contig_24748.5 Carica papaya evm.TU.contig_24748.5 N 0.708
evm.TU.contig_27553.3 Carica papaya evm.TU.contig_27553.3 N 0.708
evm.TU.contig_38604 Carica papaya evm.TU.contig_38604 N 0.708
evm.TU.contig_43014 Carica papaya evm.TU.contig_43014 N 0.708
evm.TU.supercontig_347.2 Carica papaya evm.TU.supercontig_347.2 N 0.708
evm.TU.supercontig_439.1 Carica papaya evm.TU.supercontig_439.1 N 0.708
evm.TU.supercontig_54.67 Carica papaya evm.TU.supercontig_54.67 N 0.708
Lus10030663.g Linum usitatissimum Lus10030663.g N 0.708
Lus10035456.g Linum usitatissimum Lus10035456.g N 0.708
Thhalv10000432m.g Eutrema salsugineum Thhalv10000432m.g N 0.708
LjSGA_025167.1 Lotus japonicus LjSGA_025167.1 N 0.708
LjSGA_074894.2 Lotus japonicus LjSGA_074894.2 N 0.708
MTR_3g067875 Medicago truncatula MTR_3g067875 N 0.702
POPTR_0016s12650 Populus trichocarpa POPTR_0016s12650 N 0.702
PGSC0003DMG400045423 Solanum tuberosum PGSC0003DMG400045423 N 0.700