Bo8g099550 (Brassica oleracea)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Bo8g099550 T253187_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Bo8g099550.1 MADS box 18 65

Links

Other MADS box family TFs
Other Brassica oleracea TFs

193 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra007829 Brassica rapa Bra007829 N 1.000
Bra032057 Brassica rapa Bra032057 N 0.979
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.958
AGL61 Arabidopsis thaliana AT2G24840 N 0.958
Bo4g157220 Brassica oleracea Bo4g157220 N 0.958
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.958
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.958
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.938
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.938
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.938
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.896
Bra026764 Brassica rapa Bra026764 N 0.854
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.833
29613.m000367 Ricinus communis 29613.m000367 N 0.812
30099.m001671 Ricinus communis 30099.m001671 N 0.812
cassava41915.m1 Manihot esculenta cassava41915.m1 N 0.812
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.792
Pm021070 Prunus mume Pm021070 N 0.792
Eucgr.H04834 Eucalyptus grandis Eucgr.H04834 N 0.792
MDP0000168914 Malus domestica MDP0000168914 N 0.792
SapurV1A.0019s0700 Salix purpurea SapurV1A.0019s0700 N 0.792
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.792
chr1.CM0088.830.nc Lotus japonicus chr1.CM0088.830.nc N 0.792
Bo5g113750 Brassica oleracea Bo5g113750 N 0.771
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.771
MTR_3g080940 Medicago truncatula MTR_3g080940 N 0.771
PGSC0003DMG400044387 Solanum tuberosum PGSC0003DMG400044387 N 0.771
POPTR_0009s08740 Populus trichocarpa POPTR_0009s08740 N 0.771
Solyc01g106710.1 Solanum lycopersicum Solyc01g106710.1 N 0.771
TCM_006323 Theobroma cacao TCM_006323 N 0.771
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.771
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.771
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.771
Ca_07607 Cicer arietinum Ca_07607 N 0.771
Ca_26354 Cicer arietinum Ca_26354 N 0.771
Cla006571 Citrullus lanatus Cla006571 N 0.771
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.771
mgf018529m Mimulus guttatus mgf018529m N 0.771
mgf024307m Mimulus guttatus mgf024307m N 0.771
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.771
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.771
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.771
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.771
gene01788-v1.0-hybrid Fragaria vesca gene01788-v1.0-hybrid I 0.771
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.771
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.771
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.771
Lus10030824.g Linum usitatissimum Lus10030824.g N 0.771
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.771
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.763
Bo1g112460 Brassica oleracea Bo1g112460 N 0.750
Bra022434 Brassica rapa Bra022434 N 0.750
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.750
POPTR_0008s04110 Populus trichocarpa POPTR_0008s04110 N 0.750
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.750
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.750
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.750
TCM_006325 Theobroma cacao TCM_006325 N 0.750
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.750
Pm021018 Prunus mume Pm021018 N 0.750
29838.m001672 Ricinus communis 29838.m001672 N 0.750
30099.m001672 Ricinus communis 30099.m001672 N 0.750
Aquca_015_00242 Aquilegia coerulea Aquca_015_00242 N 0.750
Aquca_015_00243 Aquilegia coerulea Aquca_015_00243 N 0.750
Aquca_054_00126 Aquilegia coerulea Aquca_054_00126 N 0.750
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.750
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.750
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.750
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.750
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.750
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.750
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.750
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.750
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.750
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.750
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.750
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.750
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.750
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.750
Lus10030663.g Linum usitatissimum Lus10030663.g N 0.750
MDP0000221590 Malus domestica MDP0000221590 N 0.750
MDP0000434703 Malus domestica MDP0000434703 I 0.750
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.750
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.750
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.750
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.750
LjSGA_042140.1 Lotus japonicus LjSGA_042140.1 N 0.750
AGL62 Arabidopsis thaliana AT5G60440 I 0.729
Bra038225 Brassica rapa Bra038225 N 0.729
fgenesh1_pm.C_scaffold_7000337 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000337 N 0.729
GLYMA10G40060 Glycine max GLYMA10G40060 N 0.729
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.729
PGSC0003DMG400043633 Solanum tuberosum PGSC0003DMG400043633 N 0.729
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.729
PRUPE_ppa022494mg Prunus persica PRUPE_ppa022494mg N 0.729
PRUPE_ppa023670mg Prunus persica PRUPE_ppa023670mg N 0.729
PRUPE_ppa024816mg Prunus persica PRUPE_ppa024816mg I 0.729
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.729
scaffold_302326.1 Arabidopsis lyrata scaffold_302326.1 I 0.729
TCM_040735 Theobroma cacao TCM_040735 N 0.729
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.729
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.729
VIT_03s0088g00610 Vitis vinifera VIT_03s0088g00610 N 0.729
Pm016629 Prunus mume Pm016629 N 0.729
Pm021017 Prunus mume Pm021017 N 0.729
Pm021071 Prunus mume Pm021071 N 0.729
Pm030655 Prunus mume Pm030655 I 0.729
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.729
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.729
cassava8711.m1 Manihot esculenta cassava8711.m1 N 0.729
Aquca_040_00096 Aquilegia coerulea Aquca_040_00096 N 0.729
Ciclev10030387m.g Citrus clementina Ciclev10030387m.g N 0.729
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.729
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.729
evm.TU.contig_27553.5 Carica papaya evm.TU.contig_27553.5 N 0.729
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N 0.729
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.729
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.729
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.729
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.729
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.729
evm.TU.contig_43014 Carica papaya evm.TU.contig_43014 N 0.729
evm.TU.contig_47064.2 Carica papaya evm.TU.contig_47064.2 N 0.729
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.729
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.729
evm.TU.supercontig_1259.1 Carica papaya evm.TU.supercontig_1259.1 N 0.729
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.729
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.729
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N 0.729
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.729
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.729
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.729
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.729
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.729
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.729
evm.TU.supercontig_851.1 Carica papaya evm.TU.supercontig_851.1 N 0.729
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.729
Gorai.012G163200 Gossypium raimondii Gorai.012G163200 N 0.729
Gorai.N026300 Gossypium raimondii Gorai.N026300 N 0.729
MDP0000233925 Malus domestica MDP0000233925 N 0.729
MDP0000278770 Malus domestica MDP0000278770 N 0.729
orange1.1g036705m.g Citrus sinensis orange1.1g036705m.g N 0.729
chr5.LjT25B19.190.nd Lotus japonicus chr5.LjT25B19.190.nd N 0.729
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.729
PGSC0003DMG400036006 Solanum tuberosum PGSC0003DMG400036006 N 0.723
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.708
Al_scaffold_0002_1221 Arabidopsis lyrata Al_scaffold_0002_1221 N 0.708
AGL23 Arabidopsis thaliana AT1G65360 N 0.708
AT4G36590 Arabidopsis thaliana AT4G36590 N 0.708
Bo4g165540 Brassica oleracea Bo4g165540 N 0.708
F775_04223 Aegilops tauschii F775_04223 I 0.708
GSMUA_Achr5G26530_001 Musa acuminata GSMUA_Achr5G26530_001 I 0.708
GSMUA_Achr8G07230_001 Musa acuminata GSMUA_Achr8G07230_001 I 0.708
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.708
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.708
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.708
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.708
PGSC0003DMG400036160 Solanum tuberosum PGSC0003DMG400036160 N 0.708
PGSC0003DMG400040127 Solanum tuberosum PGSC0003DMG400040127 N 0.708
POPTR_0007s03430 Populus trichocarpa POPTR_0007s03430 N 0.708
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.708
TRAES3BF106100060CFD_g Triticum aestivum TRAES3BF106100060CFD_g I 0.708
Ca_04659 Cicer arietinum Ca_04659 N 0.708
Ca_04660 Cicer arietinum Ca_04660 N 0.708
Ca_04661 Cicer arietinum Ca_04661 N 0.708
cassava21573.m1 Manihot esculenta cassava21573.m1 N 0.708
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.708
Ciclev10013802m.g Citrus clementina Ciclev10013802m.g N 0.708
evm.TU.contig_24748.5 Carica papaya evm.TU.contig_24748.5 N 0.708
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.708
evm.TU.contig_27553.3 Carica papaya evm.TU.contig_27553.3 N 0.708
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.708
evm.TU.contig_31285.2 Carica papaya evm.TU.contig_31285.2 N 0.708
evm.TU.contig_34259 Carica papaya evm.TU.contig_34259 N 0.708
evm.TU.contig_38329 Carica papaya evm.TU.contig_38329 N 0.708
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.708
evm.TU.contig_41894.2 Carica papaya evm.TU.contig_41894.2 N 0.708
evm.TU.supercontig_347.10 Carica papaya evm.TU.supercontig_347.10 N 0.708
evm.TU.supercontig_347.13 Carica papaya evm.TU.supercontig_347.13 N 0.708
evm.TU.supercontig_347.2 Carica papaya evm.TU.supercontig_347.2 N 0.708
evm.TU.supercontig_347.8 Carica papaya evm.TU.supercontig_347.8 N 0.708
evm.TU.supercontig_439.1 Carica papaya evm.TU.supercontig_439.1 N 0.708
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.708
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.708
evm.TU.supercontig_758.1 Carica papaya evm.TU.supercontig_758.1 N 0.708
orange1.1g045481m.g Citrus sinensis orange1.1g045481m.g N 0.708
SapurV1A.1128s0080 Salix purpurea SapurV1A.1128s0080 N 0.708
Thhalv10000432m.g Eutrema salsugineum Thhalv10000432m.g N 0.708
Thhalv10015908m.g Eutrema salsugineum Thhalv10015908m.g N 0.708
Thhalv10027307m.g Eutrema salsugineum Thhalv10027307m.g N 0.708
chr5.LjT25B19.200.nd Lotus japonicus chr5.LjT25B19.200.nd N 0.708
PDK_20s1551551g001 Phoenix dactylifera PDK_20s1551551g001 I 0.708
evm.TU.supercontig_2423.2 Carica papaya evm.TU.supercontig_2423.2 N 0.702