Bo1g112460 (Brassica oleracea)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Bo1g112460 T253056_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Bo1g112460.1 MADS box 15 62

Links

Other MADS box family TFs
Other Brassica oleracea TFs

249 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra038225 Brassica rapa Bra038225 N 0.979
Bo5g113750 Brassica oleracea Bo5g113750 N 0.958
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.958
Bra022434 Brassica rapa Bra022434 N 0.938
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.938
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.938
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.938
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.917
AGL62 Arabidopsis thaliana AT5G60440 I 0.896
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.896
TCM_006323 Theobroma cacao TCM_006323 N 0.896
Ca_04659 Cicer arietinum Ca_04659 N 0.896
Ca_04660 Cicer arietinum Ca_04660 N 0.896
Ca_04661 Cicer arietinum Ca_04661 N 0.896
Cla006571 Citrullus lanatus Cla006571 N 0.896
Pm021071 Prunus mume Pm021071 N 0.896
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.896
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.896
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.896
MDP0000434703 Malus domestica MDP0000434703 I 0.896
fgenesh1_pm.C_scaffold_7000337 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000337 N 0.875
30099.m001672 Ricinus communis 30099.m001672 N 0.875
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.875
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.875
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.875
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.875
MDP0000233925 Malus domestica MDP0000233925 N 0.875
MDP0000278770 Malus domestica MDP0000278770 N 0.875
AT4G36590 Arabidopsis thaliana AT4G36590 N 0.854
GLYMA20G27320 Glycine max GLYMA20G27320 N 0.854
GLYMA20G27341 Glycine max GLYMA20G27341 N 0.854
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.854
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.854
scaffold_302326.1 Arabidopsis lyrata scaffold_302326.1 I 0.854
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.854
Ca_04665 Cicer arietinum Ca_04665 N 0.854
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.854
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.854
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.854
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N 0.854
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.854
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.854
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.854
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.854
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.854
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.854
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.854
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N 0.854
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.854
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.854
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.854
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.854
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.854
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.854
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.854
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.854
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.833
Bo9g142570 Brassica oleracea Bo9g142570 N 0.833
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.833
MTR_1g012570 Medicago truncatula MTR_1g012570 N 0.833
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.833
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.833
MTR_2g085250 Medicago truncatula MTR_2g085250 N 0.833
MTR_2g085280 Medicago truncatula MTR_2g085280 N 0.833
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.833
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.833
MTR_5g045560 Medicago truncatula MTR_5g045560 N 0.833
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.833
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.833
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.833
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.833
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.833
Pm021018 Prunus mume Pm021018 N 0.833
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.833
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.833
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.833
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.833
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.833
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.833
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.833
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.833
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.833
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.833
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.833
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.833
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.833
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.833
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.833
Thhalv10015908m.g Eutrema salsugineum Thhalv10015908m.g N 0.833
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N 0.833
Al_scaffold_0002_1221 Arabidopsis lyrata Al_scaffold_0002_1221 N 0.812
Bra002480 Brassica rapa Bra002480 N 0.812
GLYMA10G40070 Glycine max GLYMA10G40070 N 0.812
GLYMA13G39016 Glycine max GLYMA13G39016 N 0.812
MTR_1g108510 Medicago truncatula MTR_1g108510 N 0.812
MTR_3g030770 Medicago truncatula MTR_3g030770 N 0.812
MTR_5g055100 Medicago truncatula MTR_5g055100 N 0.812
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.812
PGSC0003DMG400044387 Solanum tuberosum PGSC0003DMG400044387 N 0.812
Solyc01g106710.1 Solanum lycopersicum Solyc01g106710.1 N 0.812
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.812
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.812
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.812
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.812
Cagra.1695s0023 Capsella grandiflora Cagra.1695s0023 N 0.812
Carubv10007644m.g Capsella rubella Carubv10007644m.g N 0.812
Eucgr.I02506 Eucalyptus grandis Eucgr.I02506 N 0.812
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.812
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.812
evm.TU.supercontig_1259.1 Carica papaya evm.TU.supercontig_1259.1 N 0.812
evm.TU.supercontig_347.8 Carica papaya evm.TU.supercontig_347.8 N 0.812
evm.TU.supercontig_505.6 Carica papaya evm.TU.supercontig_505.6 N 0.812
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.812
evm.TU.supercontig_851.1 Carica papaya evm.TU.supercontig_851.1 N 0.812
MDP0000221590 Malus domestica MDP0000221590 N 0.812
Thhalv10027307m.g Eutrema salsugineum Thhalv10027307m.g N 0.812
chr2.CM0904.120.nd Lotus japonicus chr2.CM0904.120.nd N 0.812
AGL28 Arabidopsis thaliana AT1G01530 N 0.792
GLYMA10G40080 Glycine max GLYMA10G40080 N 0.792
MTR_1g105905 Medicago truncatula MTR_1g105905 N 0.792
MTR_2g030740 Medicago truncatula MTR_2g030740 N 0.792
POPTR_0007s03430 Populus trichocarpa POPTR_0007s03430 N 0.792
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.792
Ca_04662 Cicer arietinum Ca_04662 N 0.792
mgf018529m Mimulus guttatus mgf018529m N 0.792
mgf024307m Mimulus guttatus mgf024307m N 0.792
Cagra.1968s0094 Capsella grandiflora Cagra.1968s0094 N 0.792
Carubv10010156m.g Capsella rubella Carubv10010156m.g N 0.792
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.792
evm.TU.contig_35157.1 Carica papaya evm.TU.contig_35157.1 N 0.792
evm.TU.contig_38604 Carica papaya evm.TU.contig_38604 N 0.792
evm.TU.supercontig_439.1 Carica papaya evm.TU.supercontig_439.1 N 0.792
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.792
MDP0000168914 Malus domestica MDP0000168914 N 0.792
SapurV1A.0808s0160 Salix purpurea SapurV1A.0808s0160 N 0.792
Thhalv10017754m.g Eutrema salsugineum Thhalv10017754m.g N 0.792
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.789
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.771
AGL61 Arabidopsis thaliana AT2G24840 N 0.771
Bo2g024910 Brassica oleracea Bo2g024910 N 0.771
Bo4g165540 Brassica oleracea Bo4g165540 N 0.771
Bra011938 Brassica rapa Bra011938 N 0.771
MTR_2g093190 Medicago truncatula MTR_2g093190 N 0.771
MTR_3g067875 Medicago truncatula MTR_3g067875 N 0.771
MTR_5g053390 Medicago truncatula MTR_5g053390 N 0.771
PGSC0003DMG400040127 Solanum tuberosum PGSC0003DMG400040127 N 0.771
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.771
PGSC0003DMG400043633 Solanum tuberosum PGSC0003DMG400043633 N 0.771
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.771
PRUPE_ppa022494mg Prunus persica PRUPE_ppa022494mg N 0.771
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.771
VIT_03s0088g00610 Vitis vinifera VIT_03s0088g00610 N 0.771
Pm021017 Prunus mume Pm021017 N 0.771
Pm021070 Prunus mume Pm021070 N 0.771
cassava8711.m1 Manihot esculenta cassava8711.m1 N 0.771
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.771
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.771
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.771
Eucgr.H04834 Eucalyptus grandis Eucgr.H04834 N 0.771
evm.TU.supercontig_347.10 Carica papaya evm.TU.supercontig_347.10 N 0.771
evm.TU.supercontig_54.67 Carica papaya evm.TU.supercontig_54.67 N 0.771
evm.TU.supercontig_758.1 Carica papaya evm.TU.supercontig_758.1 N 0.771
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.771
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.771
Thhalv10000432m.g Eutrema salsugineum Thhalv10000432m.g N 0.771
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.771
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.771
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.771
Bo4g070340 Brassica oleracea Bo4g070340 N 0.766
AGL23 Arabidopsis thaliana AT1G65360 N 0.750
Bo8g099550 Brassica oleracea Bo8g099550 N 0.750
Bra007829 Brassica rapa Bra007829 N 0.750
GLYMA10G10640 Glycine max GLYMA10G10640 N 0.750
PGSC0003DMG400036160 Solanum tuberosum PGSC0003DMG400036160 N 0.750
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.750
TCM_040735 Theobroma cacao TCM_040735 N 0.750
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.750
mgf022790m Mimulus guttatus mgf022790m N 0.750
evm.TU.contig_24748.5 Carica papaya evm.TU.contig_24748.5 N 0.750
evm.TU.contig_27553.3 Carica papaya evm.TU.contig_27553.3 N 0.750
evm.TU.contig_37082 Carica papaya evm.TU.contig_37082 N 0.750
evm.TU.supercontig_347.2 Carica papaya evm.TU.supercontig_347.2 N 0.750
evm.TU.supercontig_505.5 Carica papaya evm.TU.supercontig_505.5 N 0.750
evm.TU.supercontig_654.5 Carica papaya evm.TU.supercontig_654.5 N 0.750
gene07364-v1.0-hybrid Fragaria vesca gene07364-v1.0-hybrid N 0.750
Lus10030663.g Linum usitatissimum Lus10030663.g N 0.750
Thhalv10003315m.g Eutrema salsugineum Thhalv10003315m.g N 0.750
chr1.CM0088.830.nc Lotus japonicus chr1.CM0088.830.nc N 0.750
LjSGA_025167.1 Lotus japonicus LjSGA_025167.1 N 0.750
Bra020247 Brassica rapa Bra020247 N 0.729
Bra032057 Brassica rapa Bra032057 N 0.729
Bra035685 Brassica rapa Bra035685 N 0.729
GLYMA10G10690 Glycine max GLYMA10G10690 N 0.729
GLYMA10G10840 Glycine max GLYMA10G10840 N 0.729
GLYMA10G10860 Glycine max GLYMA10G10860 N 0.729
GLYMA10G10930 Glycine max GLYMA10G10930 N 0.729
GLYMA10G40060 Glycine max GLYMA10G40060 N 0.729
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.729
MTR_1g108580 Medicago truncatula MTR_1g108580 N 0.729
MTR_3g080940 Medicago truncatula MTR_3g080940 N 0.729
PGSC0003DMG400035221 Solanum tuberosum PGSC0003DMG400035221 N 0.729
PGSC0003DMG400044513 Solanum tuberosum PGSC0003DMG400044513 N 0.729
PGSC0003DMG400045239 Solanum tuberosum PGSC0003DMG400045239 N 0.729
PRUPE_ppa024816mg Prunus persica PRUPE_ppa024816mg I 0.729
Solyc04g025050.1 Solanum lycopersicum Solyc04g025050.1 N 0.729
Ca_07607 Cicer arietinum Ca_07607 N 0.729
Ca_26354 Cicer arietinum Ca_26354 N 0.729
29613.m000367 Ricinus communis 29613.m000367 N 0.729
cassava21573.m1 Manihot esculenta cassava21573.m1 N 0.729
mgf022147m Mimulus guttatus mgf022147m N 0.729
evm.TU.contig_35157.2 Carica papaya evm.TU.contig_35157.2 N 0.729
gene01788-v1.0-hybrid Fragaria vesca gene01788-v1.0-hybrid I 0.729
Lus10030824.g Linum usitatissimum Lus10030824.g N 0.729
SapurV1A.0019s0700 Salix purpurea SapurV1A.0019s0700 N 0.729
chr5.LjT25B19.190.nd Lotus japonicus chr5.LjT25B19.190.nd N 0.729
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.729
MTR_1g108500 Medicago truncatula MTR_1g108500 N 0.727
PGSC0003DMG400034832 Solanum tuberosum PGSC0003DMG400034832 N 0.714
Bo4g157220 Brassica oleracea Bo4g157220 N 0.708
GLYMA10G10770 Glycine max GLYMA10G10770 N 0.708
GLYMA10G10900 Glycine max GLYMA10G10900 N 0.708
GLYMA10G10920 Glycine max GLYMA10G10920 N 0.708
GLYMA10G11450 Glycine max GLYMA10G11450 N 0.708
MTR_0121s0100 Medicago truncatula MTR_0121s0100 N 0.708
PGSC0003DMG400036006 Solanum tuberosum PGSC0003DMG400036006 N 0.708
POPTR_0009s08740 Populus trichocarpa POPTR_0009s08740 N 0.708
PRUPE_ppa023670mg Prunus persica PRUPE_ppa023670mg N 0.708
Pm016629 Prunus mume Pm016629 N 0.708
Pm030655 Prunus mume Pm030655 I 0.708
29838.m001672 Ricinus communis 29838.m001672 N 0.708
30099.m001671 Ricinus communis 30099.m001671 N 0.708
cassava41915.m1 Manihot esculenta cassava41915.m1 N 0.708
Ciclev10013802m.g Citrus clementina Ciclev10013802m.g N 0.708
Eucgr.G01185 Eucalyptus grandis Eucgr.G01185 N 0.708
evm.TU.contig_27553.5 Carica papaya evm.TU.contig_27553.5 N 0.708
evm.TU.contig_33091.3 Carica papaya evm.TU.contig_33091.3 N 0.708
evm.TU.contig_38155.1 Carica papaya evm.TU.contig_38155.1 N 0.708
evm.TU.contig_43014 Carica papaya evm.TU.contig_43014 N 0.708
evm.TU.contig_47064.2 Carica papaya evm.TU.contig_47064.2 N 0.708
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.708
evm.TU.supercontig_348.9 Carica papaya evm.TU.supercontig_348.9 N 0.708
Lus10035456.g Linum usitatissimum Lus10035456.g N 0.708
orange1.1g045481m.g Citrus sinensis orange1.1g045481m.g N 0.708
Thhalv10028255m.g Eutrema salsugineum Thhalv10028255m.g N 0.708
LjSGA_042140.1 Lotus japonicus LjSGA_042140.1 N 0.708
LjSGA_067087.1 Lotus japonicus LjSGA_067087.1 N 0.708
LjT01D09.100.nd Lotus japonicus LjT01D09.100.nd N 0.708
POPTR_0016s12650 Populus trichocarpa POPTR_0016s12650 N 0.702
evm.TU.contig_37489 Carica papaya evm.TU.contig_37489 N 0.700