CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Bostr.5325s0071
(
Boechera stricta
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
Bostr.5325s0071
T257637_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bostr.5325s0071.1.p
MADS box
15
62
KMTNEANLQVTFSKRRSGLFKKASELCTLCDAEIALIVFSPSGKVFSF
Links
Other
MADS box
family TFs
Other
Boechera stricta
TFs
256 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Al_scaffold_0001_74
Arabidopsis lyrata
Al_scaffold_0001_74
N
0.938
AGL28
Arabidopsis thaliana
AT1G01530
N
0.896
MTR_1g075600
Medicago truncatula
MTR_1g075600
N
0.896
MTR_1g077360
Medicago truncatula
MTR_1g077360
N
0.896
Cagra.1968s0094
Capsella grandiflora
Cagra.1968s0094
N
0.896
Carubv10010156m.g
Capsella rubella
Carubv10010156m.g
N
0.896
Thhalv10022102m.g
Eutrema salsugineum
Thhalv10022102m.g
N
0.896
GLYMA20G27341
Glycine max
GLYMA20G27341
N
0.875
MTR_1g108510
Medicago truncatula
MTR_1g108510
N
0.875
MTR_2g085250
Medicago truncatula
MTR_2g085250
N
0.875
MTR_2g085280
Medicago truncatula
MTR_2g085280
N
0.875
MTR_3g030770
Medicago truncatula
MTR_3g030770
N
0.875
Ca_04661
Cicer arietinum
Ca_04661
N
0.875
Cla006571
Citrullus lanatus
Cla006571
N
0.875
Cucsa.298560
Cucumis sativus
Cucsa.298560
N
0.875
Bostr.26833s0197
Boechera stricta
Bostr.26833s0197
N
0.875
Cagra.2519s0016
Capsella grandiflora
Cagra.2519s0016
N
0.875
Carubv10028580m.g
Capsella rubella
Carubv10028580m.g
N
0.875
chr2.CM0904.120.nd
Lotus japonicus
chr2.CM0904.120.nd
N
0.875
Thhalv10012100m.g
Eutrema salsugineum
Thhalv10012100m.g
I
0.868
AT4G36590
Arabidopsis thaliana
AT4G36590
N
0.854
Bo1g112460
Brassica oleracea
Bo1g112460
N
0.854
AGL62
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_8002041
N
0.854
GLYMA20G27320
Glycine max
GLYMA20G27320
N
0.854
MTR_5g055100
Medicago truncatula
MTR_5g055100
N
0.854
PRUPE_ppa026127mg
Prunus persica
PRUPE_ppa026127mg
N
0.854
Ca_04659
Cicer arietinum
Ca_04659
N
0.854
Ca_04660
Cicer arietinum
Ca_04660
N
0.854
Ca_04665
Cicer arietinum
Ca_04665
N
0.854
Pm021071
Prunus mume
Pm021071
N
0.854
30099.m001672
Ricinus communis
30099.m001672
N
0.854
Bostr.7867s1515
Boechera stricta
Bostr.7867s1515
N
0.854
evm.TU.supercontig_348.8
Carica papaya
evm.TU.supercontig_348.8
N
0.854
gene01789-v1.0-hybrid
Fragaria vesca
gene01789-v1.0-hybrid
N
0.854
MDP0000221590
Malus domestica
MDP0000221590
N
0.854
Thhalv10015908m.g
Eutrema salsugineum
Thhalv10015908m.g
N
0.854
Al_scaffold_0002_1221
Arabidopsis lyrata
Al_scaffold_0002_1221
N
0.833
AGL23
Arabidopsis thaliana
AT1G65360
N
0.833
AGL62
Arabidopsis thaliana
AT5G60440
I
0.833
Bo5g113750
Brassica oleracea
Bo5g113750
N
0.833
Bra038225
Brassica rapa
Bra038225
N
0.833
fgenesh1_pm.C_scaffold_7000337
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_7000337
N
0.833
GLYMA13G39016
Glycine max
GLYMA13G39016
N
0.833
GLYMA20G27330
Glycine max
GLYMA20G27330
N
0.833
MTR_1g012570
Medicago truncatula
MTR_1g012570
N
0.833
MTR_1g105910
Medicago truncatula
MTR_1g105910
N
0.833
MTR_1g105920
Medicago truncatula
MTR_1g105920
N
0.833
MTR_2g030740
Medicago truncatula
MTR_2g030740
N
0.833
MTR_2g093190
Medicago truncatula
MTR_2g093190
N
0.833
MTR_3g052870
Medicago truncatula
MTR_3g052870
N
0.833
MTR_3g052920
Medicago truncatula
MTR_3g052920
N
0.833
MTR_5g045560
Medicago truncatula
MTR_5g045560
N
0.833
MTR_8g043650
Medicago truncatula
MTR_8g043650
N
0.833
TCM_006323
Theobroma cacao
TCM_006323
N
0.833
VIT_03s0088g00510
Vitis vinifera
VIT_03s0088g00510
N
0.833
cassava33542.m1
Manihot esculenta
cassava33542.m1
N
0.833
Ciclev10030142m.g
Citrus clementina
Ciclev10030142m.g
N
0.833
evm.TU.contig_30689
Carica papaya
evm.TU.contig_30689
N
0.833
evm.TU.contig_35713
Carica papaya
evm.TU.contig_35713
N
0.833
evm.TU.contig_35751
Carica papaya
evm.TU.contig_35751
N
0.833
evm.TU.contig_37271
Carica papaya
evm.TU.contig_37271
N
0.833
evm.TU.supercontig_106.18
Carica papaya
evm.TU.supercontig_106.18
N
0.833
evm.TU.supercontig_106.20
Carica papaya
evm.TU.supercontig_106.20
N
0.833
evm.TU.supercontig_347.11
Carica papaya
evm.TU.supercontig_347.11
N
0.833
evm.TU.supercontig_347.7
Carica papaya
evm.TU.supercontig_347.7
N
0.833
evm.TU.supercontig_348.3
Carica papaya
evm.TU.supercontig_348.3
N
0.833
evm.TU.supercontig_625.4
Carica papaya
evm.TU.supercontig_625.4
N
0.833
evm.TU.supercontig_654.4
Carica papaya
evm.TU.supercontig_654.4
N
0.833
evm.TU.supercontig_654.6
Carica papaya
evm.TU.supercontig_654.6
N
0.833
MDP0000434703
Malus domestica
MDP0000434703
I
0.833
orange1.1g039654m.g
Citrus sinensis
orange1.1g039654m.g
N
0.833
SapurV1A.0019s0690
Salix purpurea
SapurV1A.0019s0690
N
0.833
chr3.CM0279.290.nc
Lotus japonicus
chr3.CM0279.290.nc
N
0.833
Bo2g024910
Brassica oleracea
Bo2g024910
N
0.812
Bo9g142570
Brassica oleracea
Bo9g142570
N
0.812
Bra002480
Brassica rapa
Bra002480
N
0.812
Bra022434
Brassica rapa
Bra022434
N
0.812
GLYMA10G40070
Glycine max
GLYMA10G40070
N
0.812
MTR_5g053390
Medicago truncatula
MTR_5g053390
N
0.812
POPTR_0009s08750
Populus trichocarpa
POPTR_0009s08750
N
0.812
PRUPE_ppa026089mg
Prunus persica
PRUPE_ppa026089mg
N
0.812
Solyc01g106730.1
Solanum lycopersicum
Solyc01g106730.1
N
0.812
VIT_03s0088g00550
Vitis vinifera
VIT_03s0088g00550
N
0.812
VIT_03s0088g00600
Vitis vinifera
VIT_03s0088g00600
N
0.812
Ca_04662
Cicer arietinum
Ca_04662
N
0.812
Pm021018
Prunus mume
Pm021018
N
0.812
Cagra.1695s0023
Capsella grandiflora
Cagra.1695s0023
N
0.812
Carubv10007644m.g
Capsella rubella
Carubv10007644m.g
N
0.812
Eucgr.I02506
Eucalyptus grandis
Eucgr.I02506
N
0.812
evm.TU.contig_24748.4
Carica papaya
evm.TU.contig_24748.4
N
0.812
evm.TU.contig_24748.5
Carica papaya
evm.TU.contig_24748.5
N
0.812
evm.TU.contig_26687.3
Carica papaya
evm.TU.contig_26687.3
N
0.812
evm.TU.contig_27553.3
Carica papaya
evm.TU.contig_27553.3
N
0.812
evm.TU.contig_28241.1
Carica papaya
evm.TU.contig_28241.1
N
0.812
evm.TU.contig_30005.4
Carica papaya
evm.TU.contig_30005.4
N
0.812
evm.TU.contig_30114.1
Carica papaya
evm.TU.contig_30114.1
N
0.812
evm.TU.contig_30908.1
Carica papaya
evm.TU.contig_30908.1
N
0.812
evm.TU.contig_33038
Carica papaya
evm.TU.contig_33038
N
0.812
evm.TU.supercontig_1455.2
Carica papaya
evm.TU.supercontig_1455.2
N
0.812
evm.TU.supercontig_347.2
Carica papaya
evm.TU.supercontig_347.2
N
0.812
evm.TU.supercontig_348.4
Carica papaya
evm.TU.supercontig_348.4
N
0.812
evm.TU.supercontig_439.7
Carica papaya
evm.TU.supercontig_439.7
N
0.812
evm.TU.supercontig_505.2
Carica papaya
evm.TU.supercontig_505.2
N
0.812
evm.TU.supercontig_505.4
Carica papaya
evm.TU.supercontig_505.4
N
0.812
evm.TU.supercontig_695.1
Carica papaya
evm.TU.supercontig_695.1
N
0.812
evm.TU.supercontig_695.7
Carica papaya
evm.TU.supercontig_695.7
N
0.812
evm.TU.supercontig_758.2
Carica papaya
evm.TU.supercontig_758.2
N
0.812
evm.TU.supercontig_758.4
Carica papaya
evm.TU.supercontig_758.4
N
0.812
Gorai.002G213500
Gossypium raimondii
Gorai.002G213500
N
0.812
Gorai.005G263100
Gossypium raimondii
Gorai.005G263100
N
0.812
MDP0000233925
Malus domestica
MDP0000233925
N
0.812
MDP0000278770
Malus domestica
MDP0000278770
N
0.812
chr5.LjT39E05.40.nd
Lotus japonicus
chr5.LjT39E05.40.nd
N
0.812
Bra020247
Brassica rapa
Bra020247
N
0.792
GLYMA10G40080
Glycine max
GLYMA10G40080
N
0.792
MTR_1g105905
Medicago truncatula
MTR_1g105905
N
0.792
MTR_1g108580
Medicago truncatula
MTR_1g108580
N
0.792
MTR_3g067875
Medicago truncatula
MTR_3g067875
N
0.792
PGSC0003DMG400005131
Solanum tuberosum
PGSC0003DMG400005131
N
0.792
POPTR_0017s07460
Populus trichocarpa
POPTR_0017s07460
N
0.792
scaffold_302326.1
Arabidopsis lyrata
scaffold_302326.1
I
0.792
Solyc01g106720.1
Solanum lycopersicum
Solyc01g106720.1
N
0.792
VIT_01s0010g01500
Vitis vinifera
VIT_01s0010g01500
N
0.792
cassava21387.m1
Manihot esculenta
cassava21387.m1
N
0.792
mgf018529m
Mimulus guttatus
mgf018529m
N
0.792
mgf024307m
Mimulus guttatus
mgf024307m
N
0.792
evm.TU.contig_27313
Carica papaya
evm.TU.contig_27313
N
0.792
evm.TU.contig_35157.1
Carica papaya
evm.TU.contig_35157.1
N
0.792
evm.TU.contig_41623
Carica papaya
evm.TU.contig_41623
N
0.792
evm.TU.supercontig_106.19
Carica papaya
evm.TU.supercontig_106.19
N
0.792
evm.TU.supercontig_1259.1
Carica papaya
evm.TU.supercontig_1259.1
N
0.792
evm.TU.supercontig_347.8
Carica papaya
evm.TU.supercontig_347.8
N
0.792
evm.TU.supercontig_54.68
Carica papaya
evm.TU.supercontig_54.68
N
0.792
evm.TU.supercontig_695.5
Carica papaya
evm.TU.supercontig_695.5
N
0.792
evm.TU.supercontig_758.1
Carica papaya
evm.TU.supercontig_758.1
N
0.792
SapurV1A.1313s0050
Salix purpurea
SapurV1A.1313s0050
N
0.792
Thhalv10003426m.g
Eutrema salsugineum
Thhalv10003426m.g
N
0.792
MTR_0121s0100
Medicago truncatula
MTR_0121s0100
N
0.771
PGSC0003DMG400044387
Solanum tuberosum
PGSC0003DMG400044387
N
0.771
POPTR_0007s03430
Populus trichocarpa
POPTR_0007s03430
N
0.771
PRUPE_ppa017246mg
Prunus persica
PRUPE_ppa017246mg
N
0.771
Solyc01g106710.1
Solanum lycopersicum
Solyc01g106710.1
N
0.771
VIT_03s0088g00590
Vitis vinifera
VIT_03s0088g00590
N
0.771
Pm021070
Prunus mume
Pm021070
N
0.771
evm.TU.contig_37082
Carica papaya
evm.TU.contig_37082
N
0.771
evm.TU.contig_38155.1
Carica papaya
evm.TU.contig_38155.1
N
0.771
evm.TU.supercontig_347.10
Carica papaya
evm.TU.supercontig_347.10
N
0.771
evm.TU.supercontig_505.5
Carica papaya
evm.TU.supercontig_505.5
N
0.771
evm.TU.supercontig_505.6
Carica papaya
evm.TU.supercontig_505.6
N
0.771
evm.TU.supercontig_654.5
Carica papaya
evm.TU.supercontig_654.5
N
0.771
evm.TU.supercontig_851.1
Carica papaya
evm.TU.supercontig_851.1
N
0.771
Gorai.006G127800
Gossypium raimondii
Gorai.006G127800
N
0.771
Lus10020511.g
Linum usitatissimum
Lus10020511.g
N
0.771
MDP0000168914
Malus domestica
MDP0000168914
N
0.771
SapurV1A.0808s0160
Salix purpurea
SapurV1A.0808s0160
N
0.771
Thhalv10000432m.g
Eutrema salsugineum
Thhalv10000432m.g
N
0.771
Thhalv10027307m.g
Eutrema salsugineum
Thhalv10027307m.g
N
0.771
LjSGA_067087.1
Lotus japonicus
LjSGA_067087.1
N
0.771
LjT01D09.100.nd
Lotus japonicus
LjT01D09.100.nd
N
0.771
Bra011938
Brassica rapa
Bra011938
N
0.750
PGSC0003DMG400036160
Solanum tuberosum
PGSC0003DMG400036160
N
0.750
PGSC0003DMG400041035
Solanum tuberosum
PGSC0003DMG400041035
N
0.750
PRUPE_ppa022494mg
Prunus persica
PRUPE_ppa022494mg
N
0.750
TCM_040735
Theobroma cacao
TCM_040735
N
0.750
VIT_01s0010g01530
Vitis vinifera
VIT_01s0010g01530
N
0.750
VIT_03s0088g00610
Vitis vinifera
VIT_03s0088g00610
N
0.750
Pm021017
Prunus mume
Pm021017
N
0.750
29613.m000367
Ricinus communis
29613.m000367
N
0.750
cassava8711.m1
Manihot esculenta
cassava8711.m1
N
0.750
Bostr.8705s0016
Boechera stricta
Bostr.8705s0016
N
0.750
evm.TU.contig_35157.2
Carica papaya
evm.TU.contig_35157.2
N
0.750
evm.TU.contig_38604
Carica papaya
evm.TU.contig_38604
N
0.750
evm.TU.supercontig_439.1
Carica papaya
evm.TU.supercontig_439.1
N
0.750
Lus10012449.g
Linum usitatissimum
Lus10012449.g
N
0.750
Lus10030663.g
Linum usitatissimum
Lus10030663.g
N
0.750
Thhalv10000479m.g
Eutrema salsugineum
Thhalv10000479m.g
N
0.750
Thhalv10003338m.g
Eutrema salsugineum
Thhalv10003338m.g
N
0.750
Thhalv10017754m.g
Eutrema salsugineum
Thhalv10017754m.g
N
0.750
chr1.CM0088.830.nc
Lotus japonicus
chr1.CM0088.830.nc
N
0.750
chr2.CM0250.170.nc
Lotus japonicus
chr2.CM0250.170.nc
N
0.750
chr5.LjT25B19.190.nd
Lotus japonicus
chr5.LjT25B19.190.nd
N
0.750
LjSGA_020620.1
Lotus japonicus
LjSGA_020620.1
N
0.750
LjSGA_025167.1
Lotus japonicus
LjSGA_025167.1
N
0.750
LjSGA_082681.2
Lotus japonicus
LjSGA_082681.2
N
0.750
LjSGA_120826.2
Lotus japonicus
LjSGA_120826.2
N
0.750
Bo4g070340
Brassica oleracea
Bo4g070340
N
0.745
AGL61
Arabidopsis lyrata
Al_scaffold_0004_541
N
0.729
AGL61
Arabidopsis thaliana
AT2G24840
N
0.729
Bo2g024870
Brassica oleracea
Bo2g024870
N
0.729
GLYMA20G27350
Glycine max
GLYMA20G27350
N
0.729
MTR_0121s0080
Medicago truncatula
MTR_0121s0080
N
0.729
MTR_1g075570
Medicago truncatula
MTR_1g075570
N
0.729
MTR_1g108500
Medicago truncatula
MTR_1g108500
N
0.729
MTR_3g080940
Medicago truncatula
MTR_3g080940
N
0.729
PGSC0003DMG400043633
Solanum tuberosum
PGSC0003DMG400043633
N
0.729
PGSC0003DMG400044513
Solanum tuberosum
PGSC0003DMG400044513
N
0.729
scaffold_400572.1
Arabidopsis lyrata
scaffold_400572.1
N
0.729
VIT_00s0729g00010
Vitis vinifera
VIT_00s0729g00010
I
0.729
VIT_03s0017g00360
Vitis vinifera
VIT_03s0017g00360
I
0.729
Ca_07607
Cicer arietinum
Ca_07607
N
0.729
Ca_26354
Cicer arietinum
Ca_26354
N
0.729
Cucsa.331840
Cucumis sativus
Cucsa.331840
I
0.729
mgf022790m
Mimulus guttatus
mgf022790m
N
0.729
Aquca_054_00126
Aquilegia coerulea
Aquca_054_00126
N
0.729
Cagra.1004s0007
Capsella grandiflora
Cagra.1004s0007
N
0.729
Carubv10024914m.g
Capsella rubella
Carubv10024914m.g
N
0.729
Eucgr.G01185
Eucalyptus grandis
Eucgr.G01185
N
0.729
Eucgr.H04834
Eucalyptus grandis
Eucgr.H04834
N
0.729
evm.TU.contig_33091.3
Carica papaya
evm.TU.contig_33091.3
N
0.729
evm.TU.supercontig_54.67
Carica papaya
evm.TU.supercontig_54.67
N
0.729
gene01788-v1.0-hybrid
Fragaria vesca
gene01788-v1.0-hybrid
I
0.729
Gorai.008G017200
Gossypium raimondii
Gorai.008G017200
I
0.729
Lus10030824.g
Linum usitatissimum
Lus10030824.g
N
0.729
chr1.LjB17A22.60.nc
Lotus japonicus
chr1.LjB17A22.60.nc
N
0.729
LjSGA_079719.1
Lotus japonicus
LjSGA_079719.1
N
0.729
GLYMA11G03261
Glycine max
GLYMA11G03261
N
0.717
evm.TU.contig_41453
Carica papaya
evm.TU.contig_41453
N
0.717
Bo4g165540
Brassica oleracea
Bo4g165540
N
0.708
Bo8g099550
Brassica oleracea
Bo8g099550
N
0.708
Bra007829
Brassica rapa
Bra007829
N
0.708
Bra020242
Brassica rapa
Bra020242
N
0.708
GLYMA10G40060
Glycine max
GLYMA10G40060
N
0.708
GLYMA15G06302
Glycine max
GLYMA15G06302
I
0.708
PGSC0003DMG400035221
Solanum tuberosum
PGSC0003DMG400035221
N
0.708
PGSC0003DMG400040127
Solanum tuberosum
PGSC0003DMG400040127
N
0.708
PGSC0003DMG400040625
Solanum tuberosum
PGSC0003DMG400040625
N
0.708
POPTR_0007s03270
Populus trichocarpa
POPTR_0007s03270
I
0.708
POPTR_0007s03290
Populus trichocarpa
POPTR_0007s03290
I
0.708
PRUPE_ppa023670mg
Prunus persica
PRUPE_ppa023670mg
N
0.708
Solyc04g025050.1
Solanum lycopersicum
Solyc04g025050.1
N
0.708
Solyc04g047870.1
Solanum lycopersicum
Solyc04g047870.1
N
0.708
TCM_007378
Theobroma cacao
TCM_007378
I
0.708
VIT_02s0025g04650
Vitis vinifera
VIT_02s0025g04650
I
0.708
VIT_03s0017g00450
Vitis vinifera
VIT_03s0017g00450
I
0.708
VIT_03s0167g00100
Vitis vinifera
VIT_03s0167g00100
I
0.708
VIT_15s0024g02000
Vitis vinifera
VIT_15s0024g02000
I
0.708
VIT_15s0107g00120
Vitis vinifera
VIT_15s0107g00120
I
0.708
Pm016629
Prunus mume
Pm016629
N
0.708
Pm022002
Prunus mume
Pm022002
I
0.708
30099.m001671
Ricinus communis
30099.m001671
N
0.708
cassava21573.m1
Manihot esculenta
cassava21573.m1
N
0.708
cassava41915.m1
Manihot esculenta
cassava41915.m1
N
0.708
mgf022147m
Mimulus guttatus
mgf022147m
N
0.708
Aquca_041_00050
Aquilegia coerulea
Aquca_041_00050
N
0.708
Ciclev10013802m.g
Citrus clementina
Ciclev10013802m.g
N
0.708
evm.TU.supercontig_20.86
Carica papaya
evm.TU.supercontig_20.86
N
0.708
evm.TU.supercontig_348.9
Carica papaya
evm.TU.supercontig_348.9
N
0.708
evm.TU.supercontig_695.8
Carica papaya
evm.TU.supercontig_695.8
N
0.708
Gorai.005G225500
Gossypium raimondii
Gorai.005G225500
I
0.708
Gorai.013G055700
Gossypium raimondii
Gorai.013G055700
I
0.708
orange1.1g045481m.g
Citrus sinensis
orange1.1g045481m.g
N
0.708
SapurV1A.0019s0700
Salix purpurea
SapurV1A.0019s0700
N
0.708
SapurV1A.0187s0010
Salix purpurea
SapurV1A.0187s0010
I
0.708
LjSGA_042140.1
Lotus japonicus
LjSGA_042140.1
N
0.708
LjSGA_074894.2
Lotus japonicus
LjSGA_074894.2
N
0.708
evm.TU.contig_37489
Carica papaya
evm.TU.contig_37489
N
0.700