PGSC0003DMG400035221 (Solanum tuberosum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 PGSC0003DMG400035221 T255663_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400085650 MADS box 16 63

Links

Other MADS box family TFs
Other Solanum tuberosum TFs

106 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.875
PGSC0003DMG400036160 Solanum tuberosum PGSC0003DMG400036160 N 0.854
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.833
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.792
PGSC0003DMG400044513 Solanum tuberosum PGSC0003DMG400044513 N 0.792
TCM_006323 Theobroma cacao TCM_006323 N 0.792
AGL62 Arabidopsis thaliana AT5G60440 I 0.771
PGSC0003DMG400040127 Solanum tuberosum PGSC0003DMG400040127 N 0.771
PGSC0003DMG400040625 Solanum tuberosum PGSC0003DMG400040625 N 0.771
Solyc04g047870.1 Solanum lycopersicum Solyc04g047870.1 N 0.771
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.771
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.771
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.771
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.771
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.771
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.750
Bra002480 Brassica rapa Bra002480 N 0.750
PGSC0003DMG400036006 Solanum tuberosum PGSC0003DMG400036006 N 0.750
Solyc04g025050.1 Solanum lycopersicum Solyc04g025050.1 N 0.750
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.750
Cla006571 Citrullus lanatus Cla006571 N 0.750
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.750
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.750
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.750
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.750
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.750
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.750
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.750
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.750
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.750
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.750
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.750
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.750
Al_scaffold_0002_1221 Arabidopsis lyrata Al_scaffold_0002_1221 N 0.729
Bo1g112460 Brassica oleracea Bo1g112460 N 0.729
Bo5g113750 Brassica oleracea Bo5g113750 N 0.729
Bo9g142570 Brassica oleracea Bo9g142570 N 0.729
GLYMA20G27341 Glycine max GLYMA20G27341 N 0.729
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.729
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.729
scaffold_302326.1 Arabidopsis lyrata scaffold_302326.1 I 0.729
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.729
Solyc04g025110.1 Solanum lycopersicum Solyc04g025110.1 N 0.729
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.729
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.729
Ca_04665 Cicer arietinum Ca_04665 N 0.729
Pm021071 Prunus mume Pm021071 N 0.729
30099.m001672 Ricinus communis 30099.m001672 N 0.729
mgf022147m Mimulus guttatus mgf022147m N 0.729
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.729
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.729
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.729
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.729
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.729
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.729
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.729
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.729
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.729
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.729
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.729
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.729
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.729
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.729
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.729
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.729
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.729
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.729
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.729
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.729
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.729
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.729
AGL28 Arabidopsis thaliana AT1G01530 N 0.708
Bra022434 Brassica rapa Bra022434 N 0.708
Bra038225 Brassica rapa Bra038225 N 0.708
fgenesh1_pm.C_scaffold_7000337 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000337 N 0.708
GLYMA10G40070 Glycine max GLYMA10G40070 N 0.708
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.708
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.708
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.708
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.708
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.708
MTR_1g108510 Medicago truncatula MTR_1g108510 N 0.708
MTR_3g030770 Medicago truncatula MTR_3g030770 N 0.708
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.708
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.708
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.708
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.708
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.708
Pm021018 Prunus mume Pm021018 N 0.708
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.708
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.708
Cagra.1695s0023 Capsella grandiflora Cagra.1695s0023 N 0.708
Carubv10007644m.g Capsella rubella Carubv10007644m.g N 0.708
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.708
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N 0.708
evm.TU.contig_35157.1 Carica papaya evm.TU.contig_35157.1 N 0.708
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.708
evm.TU.supercontig_1259.1 Carica papaya evm.TU.supercontig_1259.1 N 0.708
evm.TU.supercontig_347.8 Carica papaya evm.TU.supercontig_347.8 N 0.708
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N 0.708
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.708
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.708
MDP0000434703 Malus domestica MDP0000434703 I 0.708
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.708
chr2.CM0904.120.nd Lotus japonicus chr2.CM0904.120.nd N 0.708
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N 0.708