Bo5g113750 (Brassica oleracea)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Bo5g113750 T253126_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Bo5g113750.1 MADS box 15 62

Links

Other MADS box family TFs
Other Brassica oleracea TFs

265 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo1g112460 Brassica oleracea Bo1g112460 N 0.958
Bra022434 Brassica rapa Bra022434 N 0.958
Bra038225 Brassica rapa Bra038225 N 0.938
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.917
Cla006571 Citrullus lanatus Cla006571 N 0.896
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.896
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.896
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.896
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.896
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.896
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.896
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.896
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.875
fgenesh1_pm.C_scaffold_7000337 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000337 N 0.875
TCM_006323 Theobroma cacao TCM_006323 N 0.875
Ca_04659 Cicer arietinum Ca_04659 N 0.875
Ca_04660 Cicer arietinum Ca_04660 N 0.875
Ca_04661 Cicer arietinum Ca_04661 N 0.875
30099.m001672 Ricinus communis 30099.m001672 N 0.875
AT4G36590 Arabidopsis thaliana AT4G36590 N 0.854
AGL62 Arabidopsis thaliana AT5G60440 I 0.854
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.854
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.854
Pm021071 Prunus mume Pm021071 N 0.854
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.854
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N 0.854
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.854
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.854
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.854
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.854
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.854
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.854
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N 0.854
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.854
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.854
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.854
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.854
MDP0000434703 Malus domestica MDP0000434703 I 0.854
GLYMA20G27320 Glycine max GLYMA20G27320 N 0.833
GLYMA20G27341 Glycine max GLYMA20G27341 N 0.833
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.833
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.833
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.833
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.833
scaffold_302326.1 Arabidopsis lyrata scaffold_302326.1 I 0.833
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.833
Ca_04665 Cicer arietinum Ca_04665 N 0.833
Pm021018 Prunus mume Pm021018 N 0.833
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.833
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.833
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.833
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.833
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.833
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.833
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.833
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.833
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.833
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.833
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.833
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.833
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.833
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.833
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.833
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.833
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.833
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.833
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.833
MDP0000221590 Malus domestica MDP0000221590 N 0.833
MDP0000233925 Malus domestica MDP0000233925 N 0.833
MDP0000278770 Malus domestica MDP0000278770 N 0.833
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.833
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.833
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N 0.833
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.812
Bo9g142570 Brassica oleracea Bo9g142570 N 0.812
GLYMA13G39016 Glycine max GLYMA13G39016 N 0.812
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.812
MTR_1g012570 Medicago truncatula MTR_1g012570 N 0.812
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.812
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.812
MTR_2g085250 Medicago truncatula MTR_2g085250 N 0.812
MTR_2g085280 Medicago truncatula MTR_2g085280 N 0.812
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.812
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.812
MTR_5g045560 Medicago truncatula MTR_5g045560 N 0.812
MTR_5g055100 Medicago truncatula MTR_5g055100 N 0.812
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.812
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.812
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.812
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.812
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.812
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.812
Cagra.1695s0023 Capsella grandiflora Cagra.1695s0023 N 0.812
Carubv10007644m.g Capsella rubella Carubv10007644m.g N 0.812
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.812
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.812
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.812
evm.TU.supercontig_1259.1 Carica papaya evm.TU.supercontig_1259.1 N 0.812
evm.TU.supercontig_347.8 Carica papaya evm.TU.supercontig_347.8 N 0.812
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.812
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.812
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.812
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.812
Thhalv10015908m.g Eutrema salsugineum Thhalv10015908m.g N 0.812
Thhalv10027307m.g Eutrema salsugineum Thhalv10027307m.g N 0.812
Al_scaffold_0002_1221 Arabidopsis lyrata Al_scaffold_0002_1221 N 0.792
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.792
AGL61 Arabidopsis thaliana AT2G24840 N 0.792
Bra002480 Brassica rapa Bra002480 N 0.792
GLYMA10G40070 Glycine max GLYMA10G40070 N 0.792
GLYMA10G40080 Glycine max GLYMA10G40080 N 0.792
MTR_1g108510 Medicago truncatula MTR_1g108510 N 0.792
MTR_3g030770 Medicago truncatula MTR_3g030770 N 0.792
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.792
PGSC0003DMG400040127 Solanum tuberosum PGSC0003DMG400040127 N 0.792
POPTR_0007s03430 Populus trichocarpa POPTR_0007s03430 N 0.792
PRUPE_ppa022494mg Prunus persica PRUPE_ppa022494mg N 0.792
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.792
Pm021017 Prunus mume Pm021017 N 0.792
cassava8711.m1 Manihot esculenta cassava8711.m1 N 0.792
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.792
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.792
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.792
Eucgr.I02506 Eucalyptus grandis Eucgr.I02506 N 0.792
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.792
evm.TU.contig_35157.1 Carica papaya evm.TU.contig_35157.1 N 0.792
evm.TU.supercontig_347.10 Carica papaya evm.TU.supercontig_347.10 N 0.792
evm.TU.supercontig_505.6 Carica papaya evm.TU.supercontig_505.6 N 0.792
evm.TU.supercontig_758.1 Carica papaya evm.TU.supercontig_758.1 N 0.792
evm.TU.supercontig_851.1 Carica papaya evm.TU.supercontig_851.1 N 0.792
SapurV1A.0808s0160 Salix purpurea SapurV1A.0808s0160 N 0.792
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.792
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.792
chr2.CM0904.120.nd Lotus japonicus chr2.CM0904.120.nd N 0.792
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.792
AGL28 Arabidopsis thaliana AT1G01530 N 0.771
Bo2g024910 Brassica oleracea Bo2g024910 N 0.771
Bo8g099550 Brassica oleracea Bo8g099550 N 0.771
Bra007829 Brassica rapa Bra007829 N 0.771
Bra011938 Brassica rapa Bra011938 N 0.771
GLYMA10G10640 Glycine max GLYMA10G10640 N 0.771
MTR_1g105905 Medicago truncatula MTR_1g105905 N 0.771
MTR_2g030740 Medicago truncatula MTR_2g030740 N 0.771
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.771
PGSC0003DMG400044387 Solanum tuberosum PGSC0003DMG400044387 N 0.771
Solyc01g106710.1 Solanum lycopersicum Solyc01g106710.1 N 0.771
TCM_040735 Theobroma cacao TCM_040735 N 0.771
Ca_04662 Cicer arietinum Ca_04662 N 0.771
mgf018529m Mimulus guttatus mgf018529m N 0.771
mgf024307m Mimulus guttatus mgf024307m N 0.771
Cagra.1968s0094 Capsella grandiflora Cagra.1968s0094 N 0.771
Carubv10010156m.g Capsella rubella Carubv10010156m.g N 0.771
evm.TU.contig_24748.5 Carica papaya evm.TU.contig_24748.5 N 0.771
evm.TU.contig_27553.3 Carica papaya evm.TU.contig_27553.3 N 0.771
evm.TU.contig_37082 Carica papaya evm.TU.contig_37082 N 0.771
evm.TU.contig_38604 Carica papaya evm.TU.contig_38604 N 0.771
evm.TU.supercontig_347.2 Carica papaya evm.TU.supercontig_347.2 N 0.771
evm.TU.supercontig_439.1 Carica papaya evm.TU.supercontig_439.1 N 0.771
evm.TU.supercontig_505.5 Carica papaya evm.TU.supercontig_505.5 N 0.771
evm.TU.supercontig_654.5 Carica papaya evm.TU.supercontig_654.5 N 0.771
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.771
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.771
MDP0000168914 Malus domestica MDP0000168914 N 0.771
Thhalv10017754m.g Eutrema salsugineum Thhalv10017754m.g N 0.771
Bo4g070340 Brassica oleracea Bo4g070340 N 0.766
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.763
AGL23 Arabidopsis thaliana AT1G65360 N 0.750
Bo4g165540 Brassica oleracea Bo4g165540 N 0.750
Bra032057 Brassica rapa Bra032057 N 0.750
GLYMA10G10690 Glycine max GLYMA10G10690 N 0.750
GLYMA10G10840 Glycine max GLYMA10G10840 N 0.750
GLYMA10G10860 Glycine max GLYMA10G10860 N 0.750
GLYMA10G10930 Glycine max GLYMA10G10930 N 0.750
MTR_2g093190 Medicago truncatula MTR_2g093190 N 0.750
MTR_3g067875 Medicago truncatula MTR_3g067875 N 0.750
MTR_5g053390 Medicago truncatula MTR_5g053390 N 0.750
PGSC0003DMG400036160 Solanum tuberosum PGSC0003DMG400036160 N 0.750
PGSC0003DMG400045239 Solanum tuberosum PGSC0003DMG400045239 N 0.750
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.750
PRUPE_ppa024816mg Prunus persica PRUPE_ppa024816mg I 0.750
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.750
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.750
VIT_03s0088g00610 Vitis vinifera VIT_03s0088g00610 N 0.750
Pm021070 Prunus mume Pm021070 N 0.750
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.750
mgf022790m Mimulus guttatus mgf022790m N 0.750
Eucgr.H04834 Eucalyptus grandis Eucgr.H04834 N 0.750
evm.TU.contig_35157.2 Carica papaya evm.TU.contig_35157.2 N 0.750
evm.TU.supercontig_54.67 Carica papaya evm.TU.supercontig_54.67 N 0.750
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.750
Lus10030663.g Linum usitatissimum Lus10030663.g N 0.750
Thhalv10000432m.g Eutrema salsugineum Thhalv10000432m.g N 0.750
LjSGA_025167.1 Lotus japonicus LjSGA_025167.1 N 0.750
MTR_1g075570 Medicago truncatula MTR_1g075570 N 0.733
Bo4g157220 Brassica oleracea Bo4g157220 N 0.729
Bra020247 Brassica rapa Bra020247 N 0.729
GLYMA10G10770 Glycine max GLYMA10G10770 N 0.729
GLYMA10G10900 Glycine max GLYMA10G10900 N 0.729
GLYMA10G10920 Glycine max GLYMA10G10920 N 0.729
GLYMA10G11450 Glycine max GLYMA10G11450 N 0.729
MTR_1g108580 Medicago truncatula MTR_1g108580 N 0.729
PGSC0003DMG400035221 Solanum tuberosum PGSC0003DMG400035221 N 0.729
PGSC0003DMG400043633 Solanum tuberosum PGSC0003DMG400043633 N 0.729
PGSC0003DMG400044513 Solanum tuberosum PGSC0003DMG400044513 N 0.729
Solyc04g025050.1 Solanum lycopersicum Solyc04g025050.1 N 0.729
TCM_006324 Theobroma cacao TCM_006324 N 0.729
Pm030655 Prunus mume Pm030655 I 0.729
29613.m000367 Ricinus communis 29613.m000367 N 0.729
29838.m001672 Ricinus communis 29838.m001672 N 0.729
cassava21573.m1 Manihot esculenta cassava21573.m1 N 0.729
mgf022147m Mimulus guttatus mgf022147m N 0.729
evm.TU.contig_27553.5 Carica papaya evm.TU.contig_27553.5 N 0.729
evm.TU.contig_33091.3 Carica papaya evm.TU.contig_33091.3 N 0.729
evm.TU.contig_38155.1 Carica papaya evm.TU.contig_38155.1 N 0.729
evm.TU.contig_43014 Carica papaya evm.TU.contig_43014 N 0.729
evm.TU.contig_47064.2 Carica papaya evm.TU.contig_47064.2 N 0.729
evm.TU.supercontig_348.9 Carica papaya evm.TU.supercontig_348.9 N 0.729
Lus10030824.g Linum usitatissimum Lus10030824.g N 0.729
SapurV1A.0019s0700 Salix purpurea SapurV1A.0019s0700 N 0.729
chr1.CM0088.830.nc Lotus japonicus chr1.CM0088.830.nc N 0.729
chr5.LjT25B19.190.nd Lotus japonicus chr5.LjT25B19.190.nd N 0.729
LjSGA_067087.1 Lotus japonicus LjSGA_067087.1 N 0.729
LjT01D09.100.nd Lotus japonicus LjT01D09.100.nd N 0.729
PGSC0003DMG400036006 Solanum tuberosum PGSC0003DMG400036006 N 0.723
PGSC0003DMG400034832 Solanum tuberosum PGSC0003DMG400034832 N 0.714
Bra026764 Brassica rapa Bra026764 N 0.708
Bra035685 Brassica rapa Bra035685 N 0.708
GLYMA02G35080 Glycine max GLYMA02G35080 N 0.708
GLYMA10G10295 Glycine max GLYMA10G10295 N 0.708
GLYMA10G10610 Glycine max GLYMA10G10610 N 0.708
GLYMA10G40060 Glycine max GLYMA10G40060 N 0.708
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.708
MTR_3g080940 Medicago truncatula MTR_3g080940 N 0.708
POPTR_0009s08740 Populus trichocarpa POPTR_0009s08740 N 0.708
Ca_07607 Cicer arietinum Ca_07607 N 0.708
Ca_26354 Cicer arietinum Ca_26354 N 0.708
30099.m001671 Ricinus communis 30099.m001671 N 0.708
cassava41915.m1 Manihot esculenta cassava41915.m1 N 0.708
mgf022625m Mimulus guttatus mgf022625m N 0.708
Aquca_040_00096 Aquilegia coerulea Aquca_040_00096 N 0.708
Aquca_054_00126 Aquilegia coerulea Aquca_054_00126 N 0.708
Ciclev10013802m.g Citrus clementina Ciclev10013802m.g N 0.708
Ciclev10030387m.g Citrus clementina Ciclev10030387m.g N 0.708
evm.TU.contig_31285.2 Carica papaya evm.TU.contig_31285.2 N 0.708
evm.TU.contig_34259 Carica papaya evm.TU.contig_34259 N 0.708
evm.TU.contig_38329 Carica papaya evm.TU.contig_38329 N 0.708
evm.TU.contig_41894.2 Carica papaya evm.TU.contig_41894.2 N 0.708
evm.TU.supercontig_20.85 Carica papaya evm.TU.supercontig_20.85 N 0.708
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.708
evm.TU.supercontig_25.93 Carica papaya evm.TU.supercontig_25.93 I 0.708
evm.TU.supercontig_347.13 Carica papaya evm.TU.supercontig_347.13 N 0.708
evm.TU.supercontig_625.2 Carica papaya evm.TU.supercontig_625.2 N 0.708
evm.TU.supercontig_695.8 Carica papaya evm.TU.supercontig_695.8 N 0.708
gene01788-v1.0-hybrid Fragaria vesca gene01788-v1.0-hybrid I 0.708
gene07364-v1.0-hybrid Fragaria vesca gene07364-v1.0-hybrid N 0.708
MDP0000274606 Malus domestica MDP0000274606 N 0.708
orange1.1g036705m.g Citrus sinensis orange1.1g036705m.g N 0.708
orange1.1g045481m.g Citrus sinensis orange1.1g045481m.g N 0.708
Thhalv10003315m.g Eutrema salsugineum Thhalv10003315m.g N 0.708
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.708
LjSGA_082681.2 Lotus japonicus LjSGA_082681.2 N 0.708
LjSGA_120826.2 Lotus japonicus LjSGA_120826.2 N 0.708
MTR_1g108500 Medicago truncatula MTR_1g108500 N 0.705
PGSC0003DMG400036190 Solanum tuberosum PGSC0003DMG400036190 N 0.702
evm.TU.contig_37489 Carica papaya evm.TU.contig_37489 N 0.700