Gorai.006G127800 (Gossypium raimondii)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Gorai.006G127800 T258414_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.006G127800.1 MADS box 17 64

Links

Other MADS box family TFs
Other Gossypium raimondii TFs

258 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_040735 Theobroma cacao TCM_040735 N 0.958
POPTR_0009s08740 Populus trichocarpa POPTR_0009s08740 N 0.896
29613.m000367 Ricinus communis 29613.m000367 N 0.896
mgf018529m Mimulus guttatus mgf018529m N 0.896
mgf024307m Mimulus guttatus mgf024307m N 0.896
Eucgr.H04834 Eucalyptus grandis Eucgr.H04834 N 0.896
PGSC0003DMG400044387 Solanum tuberosum PGSC0003DMG400044387 N 0.875
POPTR_0008s04110 Populus trichocarpa POPTR_0008s04110 N 0.875
Solyc01g106710.1 Solanum lycopersicum Solyc01g106710.1 N 0.875
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.875
Ciclev10013802m.g Citrus clementina Ciclev10013802m.g N 0.875
MDP0000168914 Malus domestica MDP0000168914 N 0.875
orange1.1g045481m.g Citrus sinensis orange1.1g045481m.g N 0.875
SapurV1A.0019s0700 Salix purpurea SapurV1A.0019s0700 N 0.875
chr1.CM0088.830.nc Lotus japonicus chr1.CM0088.830.nc N 0.875
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.854
Pm021070 Prunus mume Pm021070 N 0.854
30099.m001671 Ricinus communis 30099.m001671 N 0.854
cassava41915.m1 Manihot esculenta cassava41915.m1 N 0.854
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.833
MTR_3g080940 Medicago truncatula MTR_3g080940 N 0.833
TCM_006324 Theobroma cacao TCM_006324 N 0.833
VIT_03s0088g00610 Vitis vinifera VIT_03s0088g00610 N 0.833
Ca_07607 Cicer arietinum Ca_07607 N 0.833
Ca_26354 Cicer arietinum Ca_26354 N 0.833
Ciclev10030387m.g Citrus clementina Ciclev10030387m.g N 0.833
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.833
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.833
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.833
gene01788-v1.0-hybrid Fragaria vesca gene01788-v1.0-hybrid I 0.833
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.833
Lus10030824.g Linum usitatissimum Lus10030824.g N 0.833
orange1.1g036705m.g Citrus sinensis orange1.1g036705m.g N 0.833
SapurV1A.1128s0080 Salix purpurea SapurV1A.1128s0080 N 0.833
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.833
PGSC0003DMG400043633 Solanum tuberosum PGSC0003DMG400043633 N 0.812
PRUPE_ppa023670mg Prunus persica PRUPE_ppa023670mg N 0.812
TCM_006323 Theobroma cacao TCM_006323 N 0.812
Pm016629 Prunus mume Pm016629 N 0.812
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.812
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.812
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.812
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.812
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.812
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.812
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.812
Lus10030663.g Linum usitatissimum Lus10030663.g N 0.812
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.812
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.812
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.812
LjSGA_042140.1 Lotus japonicus LjSGA_042140.1 N 0.812
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.792
AGL23 Arabidopsis thaliana AT1G65360 N 0.792
AGL61 Arabidopsis thaliana AT2G24840 N 0.792
Bra022434 Brassica rapa Bra022434 N 0.792
Bra026764 Brassica rapa Bra026764 N 0.792
GLYMA10G40060 Glycine max GLYMA10G40060 N 0.792
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.792
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.792
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.792
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.792
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.792
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.792
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.792
Cla006571 Citrullus lanatus Cla006571 N 0.792
Pm021071 Prunus mume Pm021071 N 0.792
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.792
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.792
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.792
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.792
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.792
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.792
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.792
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.792
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.792
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.792
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.792
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.792
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.792
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.792
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.792
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.792
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.792
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.792
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.792
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.792
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.792
Thhalv10027307m.g Eutrema salsugineum Thhalv10027307m.g N 0.792
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N 0.792
MTR_1g108500 Medicago truncatula MTR_1g108500 N 0.773
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.771
Al_scaffold_0002_1221 Arabidopsis lyrata Al_scaffold_0002_1221 N 0.771
Bo1g112460 Brassica oleracea Bo1g112460 N 0.771
Bo5g113750 Brassica oleracea Bo5g113750 N 0.771
Bo8g099550 Brassica oleracea Bo8g099550 N 0.771
Bra002480 Brassica rapa Bra002480 N 0.771
Bra007829 Brassica rapa Bra007829 N 0.771
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.771
GLYMA20G27320 Glycine max GLYMA20G27320 N 0.771
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.771
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.771
MTR_1g108510 Medicago truncatula MTR_1g108510 N 0.771
MTR_2g030740 Medicago truncatula MTR_2g030740 N 0.771
MTR_3g030770 Medicago truncatula MTR_3g030770 N 0.771
PGSC0003DMG400036160 Solanum tuberosum PGSC0003DMG400036160 N 0.771
PGSC0003DMG400039595 Solanum tuberosum PGSC0003DMG400039595 N 0.771
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.771
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.771
scaffold_302326.1 Arabidopsis lyrata scaffold_302326.1 I 0.771
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.771
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.771
30099.m001672 Ricinus communis 30099.m001672 N 0.771
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.771
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.771
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.771
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.771
evm.TU.contig_24748.5 Carica papaya evm.TU.contig_24748.5 N 0.771
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.771
evm.TU.contig_27553.3 Carica papaya evm.TU.contig_27553.3 N 0.771
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.771
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.771
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.771
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.771
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.771
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.771
evm.TU.supercontig_347.2 Carica papaya evm.TU.supercontig_347.2 N 0.771
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.771
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.771
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.771
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.771
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.771
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.771
evm.TU.supercontig_758.1 Carica papaya evm.TU.supercontig_758.1 N 0.771
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.771
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.771
evm.TU.supercontig_851.1 Carica papaya evm.TU.supercontig_851.1 N 0.771
MDP0000434703 Malus domestica MDP0000434703 I 0.771
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.763
AT4G36590 Arabidopsis thaliana AT4G36590 N 0.750
AGL62 Arabidopsis thaliana AT5G60440 I 0.750
Bo4g165540 Brassica oleracea Bo4g165540 N 0.750
Bo9g142570 Brassica oleracea Bo9g142570 N 0.750
Bra011938 Brassica rapa Bra011938 N 0.750
Bra032057 Brassica rapa Bra032057 N 0.750
Bra038225 Brassica rapa Bra038225 N 0.750
fgenesh1_pm.C_scaffold_7000337 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000337 N 0.750
GLYMA10G40080 Glycine max GLYMA10G40080 N 0.750
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.750
GLYMA20G27361 Glycine max GLYMA20G27361 N 0.750
MTR_1g012570 Medicago truncatula MTR_1g012570 N 0.750
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.750
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.750
MTR_1g108580 Medicago truncatula MTR_1g108580 N 0.750
MTR_2g085250 Medicago truncatula MTR_2g085250 N 0.750
MTR_2g085280 Medicago truncatula MTR_2g085280 N 0.750
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.750
MTR_5g055100 Medicago truncatula MTR_5g055100 N 0.750
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.750
POPTR_0007s03430 Populus trichocarpa POPTR_0007s03430 N 0.750
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.750
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.750
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.750
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.750
Ca_04661 Cicer arietinum Ca_04661 N 0.750
Pm021018 Prunus mume Pm021018 N 0.750
Aquca_015_00242 Aquilegia coerulea Aquca_015_00242 N 0.750
Aquca_015_00243 Aquilegia coerulea Aquca_015_00243 N 0.750
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.750
Aquca_054_00126 Aquilegia coerulea Aquca_054_00126 N 0.750
Cagra.1968s0094 Capsella grandiflora Cagra.1968s0094 N 0.750
Carubv10010156m.g Capsella rubella Carubv10010156m.g N 0.750
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.750
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N 0.750
evm.TU.contig_33091.3 Carica papaya evm.TU.contig_33091.3 N 0.750
evm.TU.contig_35697 Carica papaya evm.TU.contig_35697 N 0.750
evm.TU.contig_37082 Carica papaya evm.TU.contig_37082 N 0.750
evm.TU.supercontig_1259.1 Carica papaya evm.TU.supercontig_1259.1 N 0.750
evm.TU.supercontig_347.10 Carica papaya evm.TU.supercontig_347.10 N 0.750
evm.TU.supercontig_347.8 Carica papaya evm.TU.supercontig_347.8 N 0.750
evm.TU.supercontig_348.9 Carica papaya evm.TU.supercontig_348.9 N 0.750
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N 0.750
evm.TU.supercontig_505.5 Carica papaya evm.TU.supercontig_505.5 N 0.750
evm.TU.supercontig_654.5 Carica papaya evm.TU.supercontig_654.5 N 0.750
MDP0000221590 Malus domestica MDP0000221590 N 0.750
MDP0000233925 Malus domestica MDP0000233925 N 0.750
MDP0000278770 Malus domestica MDP0000278770 N 0.750
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.750
Thhalv10000432m.g Eutrema salsugineum Thhalv10000432m.g N 0.750
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.750
Thhalv10017754m.g Eutrema salsugineum Thhalv10017754m.g N 0.750
chr2.CM0250.170.nc Lotus japonicus chr2.CM0250.170.nc N 0.750
chr5.LjT25B19.190.nd Lotus japonicus chr5.LjT25B19.190.nd N 0.750
chr5.LjT25B19.200.nd Lotus japonicus chr5.LjT25B19.200.nd N 0.750
LjSGA_025167.1 Lotus japonicus LjSGA_025167.1 N 0.750
Bo4g070340 Brassica oleracea Bo4g070340 N 0.745
PGSC0003DMG400036006 Solanum tuberosum PGSC0003DMG400036006 N 0.745
evm.TU.contig_27553.5 Carica papaya evm.TU.contig_27553.5 N 0.745
evm.TU.contig_47064.2 Carica papaya evm.TU.contig_47064.2 N 0.745
AGL28 Arabidopsis thaliana AT1G01530 N 0.729
Bo2g024870 Brassica oleracea Bo2g024870 N 0.729
Bo2g024910 Brassica oleracea Bo2g024910 N 0.729
Bo4g157220 Brassica oleracea Bo4g157220 N 0.729
Bra020247 Brassica rapa Bra020247 N 0.729
GLYMA10G40070 Glycine max GLYMA10G40070 N 0.729
GLYMA20G27341 Glycine max GLYMA20G27341 N 0.729
MTR_0121s0080 Medicago truncatula MTR_0121s0080 N 0.729
MTR_2g093190 Medicago truncatula MTR_2g093190 N 0.729
MTR_5g045560 Medicago truncatula MTR_5g045560 N 0.729
MTR_8g086290 Medicago truncatula MTR_8g086290 N 0.729
Ca_04659 Cicer arietinum Ca_04659 N 0.729
Ca_04660 Cicer arietinum Ca_04660 N 0.729
Ca_04662 Cicer arietinum Ca_04662 N 0.729
Ca_04665 Cicer arietinum Ca_04665 N 0.729
cassava21573.m1 Manihot esculenta cassava21573.m1 N 0.729
cassava8711.m1 Manihot esculenta cassava8711.m1 N 0.729
Aquca_040_00096 Aquilegia coerulea Aquca_040_00096 N 0.729
Cagra.1695s0023 Capsella grandiflora Cagra.1695s0023 N 0.729
Carubv10007644m.g Capsella rubella Carubv10007644m.g N 0.729
Eucgr.G01185 Eucalyptus grandis Eucgr.G01185 N 0.729
Eucgr.I02506 Eucalyptus grandis Eucgr.I02506 N 0.729
evm.TU.contig_35157.1 Carica papaya evm.TU.contig_35157.1 N 0.729
evm.TU.contig_35157.2 Carica papaya evm.TU.contig_35157.2 N 0.729
evm.TU.contig_38155.1 Carica papaya evm.TU.contig_38155.1 N 0.729
evm.TU.contig_43014 Carica papaya evm.TU.contig_43014 N 0.729
evm.TU.supercontig_505.6 Carica papaya evm.TU.supercontig_505.6 N 0.729
evm.TU.supercontig_54.67 Carica papaya evm.TU.supercontig_54.67 N 0.729
evm.TU.supercontig_695.8 Carica papaya evm.TU.supercontig_695.8 N 0.729
Thhalv10015908m.g Eutrema salsugineum Thhalv10015908m.g N 0.729
chr2.CM0904.120.nd Lotus japonicus chr2.CM0904.120.nd N 0.729
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.729
LjSGA_028458.1.1 Lotus japonicus LjSGA_028458.1.1 N 0.729
Bra035685 Brassica rapa Bra035685 N 0.723
evm.TU.contig_33091.2 Carica papaya evm.TU.contig_33091.2 N 0.714
Bra020242 Brassica rapa Bra020242 N 0.708
GLYMA13G39016 Glycine max GLYMA13G39016 N 0.708
GLYMA17G01771 Glycine max GLYMA17G01771 N 0.708
MTR_1g105905 Medicago truncatula MTR_1g105905 N 0.708
PGSC0003DMG400045239 Solanum tuberosum PGSC0003DMG400045239 N 0.708
POPTR_0004s13600 Populus trichocarpa POPTR_0004s13600 N 0.708
Solyc04g047870.1 Solanum lycopersicum Solyc04g047870.1 N 0.708
Ca_04658 Cicer arietinum Ca_04658 N 0.708
Ca_18845 Cicer arietinum Ca_18845 N 0.708
Cla010744 Citrullus lanatus Cla010744 N 0.708
mgf021403m Mimulus guttatus mgf021403m N 0.708
mgf022147m Mimulus guttatus mgf022147m N 0.708
evm.TU.contig_31285.2 Carica papaya evm.TU.contig_31285.2 N 0.708
evm.TU.contig_34259 Carica papaya evm.TU.contig_34259 N 0.708
evm.TU.contig_38329 Carica papaya evm.TU.contig_38329 N 0.708
evm.TU.contig_38604 Carica papaya evm.TU.contig_38604 N 0.708
evm.TU.contig_41894.2 Carica papaya evm.TU.contig_41894.2 N 0.708
evm.TU.supercontig_347.13 Carica papaya evm.TU.supercontig_347.13 N 0.708
evm.TU.supercontig_348.1 Carica papaya evm.TU.supercontig_348.1 N 0.708
evm.TU.supercontig_439.1 Carica papaya evm.TU.supercontig_439.1 N 0.708
evm.TU.supercontig_625.2 Carica papaya evm.TU.supercontig_625.2 N 0.708
SapurV1A.0808s0160 Salix purpurea SapurV1A.0808s0160 N 0.708
LjSGA_100222.1 Lotus japonicus LjSGA_100222.1 N 0.708
Solyc01g060310.1 Solanum lycopersicum Solyc01g060310.1 N 0.702
evm.TU.supercontig_2423.2 Carica papaya evm.TU.supercontig_2423.2 N 0.702