MDP0000434703 (Malus domestica)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 MDP0000434703 T258755_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL91
M10922_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT3G66656_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000434703 MADS box 15 62

Links

Other MADS box family TFs
Other Malus domestica TFs

263 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.979
Pm021071 Prunus mume Pm021071 N 0.979
MDP0000233925 Malus domestica MDP0000233925 N 0.979
MDP0000278770 Malus domestica MDP0000278770 N 0.979
AGL62 Arabidopsis thaliana AT5G60440 I 0.938
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.938
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.938
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.938
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.938
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.917
Ca_04659 Cicer arietinum Ca_04659 N 0.917
Ca_04660 Cicer arietinum Ca_04660 N 0.917
Cla006571 Citrullus lanatus Cla006571 N 0.917
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.917
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.917
Bo1g112460 Brassica oleracea Bo1g112460 N 0.896
GLYMA20G27320 Glycine max GLYMA20G27320 N 0.896
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.896
TCM_006323 Theobroma cacao TCM_006323 N 0.896
Ca_04665 Cicer arietinum Ca_04665 N 0.896
30099.m001672 Ricinus communis 30099.m001672 N 0.896
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.896
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.896
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.896
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.896
Thhalv10015908m.g Eutrema salsugineum Thhalv10015908m.g N 0.896
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.896
Bra038225 Brassica rapa Bra038225 N 0.875
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.875
GLYMA20G27341 Glycine max GLYMA20G27341 N 0.875
MTR_1g012570 Medicago truncatula MTR_1g012570 N 0.875
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.875
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.875
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.875
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.875
MTR_5g045560 Medicago truncatula MTR_5g045560 N 0.875
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.875
POPTR_0007s03430 Populus trichocarpa POPTR_0007s03430 N 0.875
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.875
Ca_04661 Cicer arietinum Ca_04661 N 0.875
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.875
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.875
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.875
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.875
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.875
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.875
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.875
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.875
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.875
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.875
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.875
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.875
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.875
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.875
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.875
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.875
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.854
AT4G36590 Arabidopsis thaliana AT4G36590 N 0.854
Bo5g113750 Brassica oleracea Bo5g113750 N 0.854
fgenesh1_pm.C_scaffold_7000337 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000337 N 0.854
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.854
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.854
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.854
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.854
scaffold_302326.1 Arabidopsis lyrata scaffold_302326.1 I 0.854
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.854
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.854
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.854
Pm021018 Prunus mume Pm021018 N 0.854
Eucgr.I02506 Eucalyptus grandis Eucgr.I02506 N 0.854
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.854
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.854
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.854
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N 0.854
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.854
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.854
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.854
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.854
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.854
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N 0.854
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.854
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.854
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.854
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.854
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.854
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.854
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.854
Bra002480 Brassica rapa Bra002480 N 0.833
Bra022434 Brassica rapa Bra022434 N 0.833
GLYMA10G40070 Glycine max GLYMA10G40070 N 0.833
GLYMA10G40080 Glycine max GLYMA10G40080 N 0.833
GLYMA13G39016 Glycine max GLYMA13G39016 N 0.833
MTR_1g105905 Medicago truncatula MTR_1g105905 N 0.833
MTR_1g108510 Medicago truncatula MTR_1g108510 N 0.833
MTR_2g030740 Medicago truncatula MTR_2g030740 N 0.833
MTR_2g085250 Medicago truncatula MTR_2g085250 N 0.833
MTR_2g085280 Medicago truncatula MTR_2g085280 N 0.833
MTR_3g030770 Medicago truncatula MTR_3g030770 N 0.833
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.833
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.833
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.833
Ca_04662 Cicer arietinum Ca_04662 N 0.833
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.833
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.833
evm.TU.supercontig_347.8 Carica papaya evm.TU.supercontig_347.8 N 0.833
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.833
evm.TU.supercontig_505.6 Carica papaya evm.TU.supercontig_505.6 N 0.833
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.833
SapurV1A.0808s0160 Salix purpurea SapurV1A.0808s0160 N 0.833
Thhalv10027307m.g Eutrema salsugineum Thhalv10027307m.g N 0.833
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N 0.833
Al_scaffold_0002_1221 Arabidopsis lyrata Al_scaffold_0002_1221 N 0.812
AGL28 Arabidopsis thaliana AT1G01530 N 0.812
Bo4g165540 Brassica oleracea Bo4g165540 N 0.812
Bo9g142570 Brassica oleracea Bo9g142570 N 0.812
MTR_3g067875 Medicago truncatula MTR_3g067875 N 0.812
MTR_5g053390 Medicago truncatula MTR_5g053390 N 0.812
MTR_5g055100 Medicago truncatula MTR_5g055100 N 0.812
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.812
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.812
evm.TU.contig_35157.1 Carica papaya evm.TU.contig_35157.1 N 0.812
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.812
evm.TU.supercontig_1259.1 Carica papaya evm.TU.supercontig_1259.1 N 0.812
evm.TU.supercontig_851.1 Carica papaya evm.TU.supercontig_851.1 N 0.812
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.812
chr2.CM0904.120.nd Lotus japonicus chr2.CM0904.120.nd N 0.812
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.792
AGL61 Arabidopsis thaliana AT2G24840 N 0.792
MTR_2g093190 Medicago truncatula MTR_2g093190 N 0.792
PGSC0003DMG400044387 Solanum tuberosum PGSC0003DMG400044387 N 0.792
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.792
PRUPE_ppa022494mg Prunus persica PRUPE_ppa022494mg N 0.792
Solyc01g106710.1 Solanum lycopersicum Solyc01g106710.1 N 0.792
TCM_040735 Theobroma cacao TCM_040735 N 0.792
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.792
Pm021017 Prunus mume Pm021017 N 0.792
Pm021070 Prunus mume Pm021070 N 0.792
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.792
Cagra.1695s0023 Capsella grandiflora Cagra.1695s0023 N 0.792
Cagra.1968s0094 Capsella grandiflora Cagra.1968s0094 N 0.792
Carubv10007644m.g Capsella rubella Carubv10007644m.g N 0.792
Carubv10010156m.g Capsella rubella Carubv10010156m.g N 0.792
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.792
evm.TU.contig_38604 Carica papaya evm.TU.contig_38604 N 0.792
evm.TU.supercontig_439.1 Carica papaya evm.TU.supercontig_439.1 N 0.792
evm.TU.supercontig_54.67 Carica papaya evm.TU.supercontig_54.67 N 0.792
gene01788-v1.0-hybrid Fragaria vesca gene01788-v1.0-hybrid I 0.792
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.792
MDP0000221590 Malus domestica MDP0000221590 N 0.792
Thhalv10017754m.g Eutrema salsugineum Thhalv10017754m.g N 0.792
chr1.CM0088.830.nc Lotus japonicus chr1.CM0088.830.nc N 0.792
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.792
Bra011938 Brassica rapa Bra011938 N 0.771
Bra035685 Brassica rapa Bra035685 N 0.771
MTR_1g108580 Medicago truncatula MTR_1g108580 N 0.771
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.771
cassava8711.m1 Manihot esculenta cassava8711.m1 N 0.771
mgf018529m Mimulus guttatus mgf018529m N 0.771
mgf022147m Mimulus guttatus mgf022147m N 0.771
mgf024307m Mimulus guttatus mgf024307m N 0.771
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.771
Eucgr.H04834 Eucalyptus grandis Eucgr.H04834 N 0.771
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.771
MDP0000168914 Malus domestica MDP0000168914 N 0.771
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.771
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.771
LjSGA_025167.1 Lotus japonicus LjSGA_025167.1 N 0.771
Bo4g070340 Brassica oleracea Bo4g070340 N 0.766
AGL23 Arabidopsis thaliana AT1G65360 N 0.750
Bo4g157220 Brassica oleracea Bo4g157220 N 0.750
Bo8g099550 Brassica oleracea Bo8g099550 N 0.750
Bra007829 Brassica rapa Bra007829 N 0.750
Bra020247 Brassica rapa Bra020247 N 0.750
Bra026764 Brassica rapa Bra026764 N 0.750
GLYMA10G10640 Glycine max GLYMA10G10640 N 0.750
GLYMA10G10840 Glycine max GLYMA10G10840 N 0.750
GLYMA10G10860 Glycine max GLYMA10G10860 N 0.750
GLYMA10G10930 Glycine max GLYMA10G10930 N 0.750
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.750
MTR_3g080940 Medicago truncatula MTR_3g080940 N 0.750
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.750
PGSC0003DMG400043633 Solanum tuberosum PGSC0003DMG400043633 N 0.750
PRUPE_ppa023670mg Prunus persica PRUPE_ppa023670mg N 0.750
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.750
VIT_03s0088g00610 Vitis vinifera VIT_03s0088g00610 N 0.750
Ca_07607 Cicer arietinum Ca_07607 N 0.750
Ca_26354 Cicer arietinum Ca_26354 N 0.750
Pm016629 Prunus mume Pm016629 N 0.750
29613.m000367 Ricinus communis 29613.m000367 N 0.750
cassava21573.m1 Manihot esculenta cassava21573.m1 N 0.750
mgf022790m Mimulus guttatus mgf022790m N 0.750
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.750
evm.TU.supercontig_347.10 Carica papaya evm.TU.supercontig_347.10 N 0.750
evm.TU.supercontig_758.1 Carica papaya evm.TU.supercontig_758.1 N 0.750
Lus10031073.g Linum usitatissimum Lus10031073.g N 0.750
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.750
Bra032057 Brassica rapa Bra032057 N 0.729
GLYMA10G10690 Glycine max GLYMA10G10690 N 0.729
GLYMA10G10770 Glycine max GLYMA10G10770 N 0.729
GLYMA10G10900 Glycine max GLYMA10G10900 N 0.729
GLYMA10G10920 Glycine max GLYMA10G10920 N 0.729
GLYMA10G11450 Glycine max GLYMA10G11450 N 0.729
MTR_0121s0080 Medicago truncatula MTR_0121s0080 N 0.729
MTR_0121s0100 Medicago truncatula MTR_0121s0100 N 0.729
PGSC0003DMG400036160 Solanum tuberosum PGSC0003DMG400036160 N 0.729
PGSC0003DMG400040127 Solanum tuberosum PGSC0003DMG400040127 N 0.729
TCM_006324 Theobroma cacao TCM_006324 N 0.729
TCM_006325 Theobroma cacao TCM_006325 N 0.729
29838.m001672 Ricinus communis 29838.m001672 N 0.729
Aquca_054_00126 Aquilegia coerulea Aquca_054_00126 N 0.729
Eucgr.G01185 Eucalyptus grandis Eucgr.G01185 N 0.729
evm.TU.contig_24748.5 Carica papaya evm.TU.contig_24748.5 N 0.729
evm.TU.contig_27553.3 Carica papaya evm.TU.contig_27553.3 N 0.729
evm.TU.contig_37082 Carica papaya evm.TU.contig_37082 N 0.729
evm.TU.supercontig_347.2 Carica papaya evm.TU.supercontig_347.2 N 0.729
evm.TU.supercontig_505.5 Carica papaya evm.TU.supercontig_505.5 N 0.729
evm.TU.supercontig_654.5 Carica papaya evm.TU.supercontig_654.5 N 0.729
Gorai.012G163200 Gossypium raimondii Gorai.012G163200 N 0.729
Gorai.N026300 Gossypium raimondii Gorai.N026300 N 0.729
Lus10030663.g Linum usitatissimum Lus10030663.g N 0.729
Lus10035456.g Linum usitatissimum Lus10035456.g N 0.729
Thhalv10000432m.g Eutrema salsugineum Thhalv10000432m.g N 0.729
Thhalv10003315m.g Eutrema salsugineum Thhalv10003315m.g N 0.729
Thhalv10028255m.g Eutrema salsugineum Thhalv10028255m.g N 0.729
chr1.LjB17A22.60.nc Lotus japonicus chr1.LjB17A22.60.nc N 0.729
chr5.LjT25B19.190.nd Lotus japonicus chr5.LjT25B19.190.nd N 0.729
LjSGA_042140.1 Lotus japonicus LjSGA_042140.1 N 0.729
AGL91 Arabidopsis thaliana AT3G66656 D 0.708
Bo2g024910 Brassica oleracea Bo2g024910 N 0.708
AGL91 Arabidopsis lyrata fgenesh2_kg.3__679__AT3G66656.1 I 0.708
GLYMA10G10610 Glycine max GLYMA10G10610 N 0.708
GLYMA10G40060 Glycine max GLYMA10G40060 N 0.708
GLYMA17G01771 Glycine max GLYMA17G01771 N 0.708
PGSC0003DMG400035221 Solanum tuberosum PGSC0003DMG400035221 N 0.708
PGSC0003DMG400045239 Solanum tuberosum PGSC0003DMG400045239 N 0.708
POPTR_0008s04110 Populus trichocarpa POPTR_0008s04110 N 0.708
POPTR_0017s06710 Populus trichocarpa POPTR_0017s06710 N 0.708
POPTR_0017s06800 Populus trichocarpa POPTR_0017s06800 N 0.708
PRUPE_ppa024816mg Prunus persica PRUPE_ppa024816mg I 0.708
Solyc04g025050.1 Solanum lycopersicum Solyc04g025050.1 N 0.708
Cla010744 Citrullus lanatus Cla010744 N 0.708
Pm030655 Prunus mume Pm030655 I 0.708
30099.m001671 Ricinus communis 30099.m001671 N 0.708
cassava41915.m1 Manihot esculenta cassava41915.m1 N 0.708
mgf022625m Mimulus guttatus mgf022625m N 0.708
Aquca_015_00242 Aquilegia coerulea Aquca_015_00242 N 0.708
Aquca_015_00243 Aquilegia coerulea Aquca_015_00243 N 0.708
Aquca_040_00096 Aquilegia coerulea Aquca_040_00096 N 0.708
Ciclev10030327m.g Citrus clementina Ciclev10030327m.g N 0.708
evm.TU.contig_33091.3 Carica papaya evm.TU.contig_33091.3 N 0.708
evm.TU.contig_35157.2 Carica papaya evm.TU.contig_35157.2 N 0.708
evm.TU.contig_37718 Carica papaya evm.TU.contig_37718 N 0.708
evm.TU.contig_37906 Carica papaya evm.TU.contig_37906 N 0.708
evm.TU.supercontig_348.9 Carica papaya evm.TU.supercontig_348.9 N 0.708
Lus10030824.g Linum usitatissimum Lus10030824.g N 0.708
orange1.1g045249m.g Citrus sinensis orange1.1g045249m.g N 0.708
SapurV1A.0019s0700 Salix purpurea SapurV1A.0019s0700 N 0.708
Thhalv10022154m.g Eutrema salsugineum Thhalv10022154m.g I 0.708
chr1.LjB17A22.10.nc Lotus japonicus chr1.LjB17A22.10.nc N 0.708
chr1.LjB17A22.80.nc Lotus japonicus chr1.LjB17A22.80.nc N 0.708
LjSGA_067087.1 Lotus japonicus LjSGA_067087.1 N 0.708
LjSGA_074894.2 Lotus japonicus LjSGA_074894.2 N 0.708
LjT01D09.100.nd Lotus japonicus LjT01D09.100.nd N 0.708