chr1.LjB17A22.10.nc (Lotus japonicus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 chr1.LjB17A22.10.nc T259316_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
chr1.LjB17A22.10.nc MADS box 15 62

Links

Other MADS box family TFs
Other Lotus japonicus TFs

77 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LjSGA_074894.2 Lotus japonicus LjSGA_074894.2 N 0.979
chr1.LjB17A22.80.nc Lotus japonicus chr1.LjB17A22.80.nc N 0.958
chr1.LjB17A22.60.nc Lotus japonicus chr1.LjB17A22.60.nc N 0.917
LjSGA_056509.1 Lotus japonicus LjSGA_056509.1 N 0.854
LjSGA_064645.1 Lotus japonicus LjSGA_064645.1 N 0.854
LjSGA_102731.1 Lotus japonicus LjSGA_102731.1 N 0.833
LjSGA_070157.1 Lotus japonicus LjSGA_070157.1 N 0.830
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.750
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.750
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.750
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.729
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.729
Cla006571 Citrullus lanatus Cla006571 N 0.729
Pm021070 Prunus mume Pm021070 N 0.729
Pm021071 Prunus mume Pm021071 N 0.729
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.729
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.729
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.729
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.729
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.729
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.729
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.729
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.729
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.729
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.729
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.729
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.729
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.729
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.729
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.729
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.729
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.729
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.708
AGL62 Arabidopsis thaliana AT5G60440 I 0.708
Bra026764 Brassica rapa Bra026764 N 0.708
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.708
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.708
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.708
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.708
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.708
PRUPE_ppa023670mg Prunus persica PRUPE_ppa023670mg N 0.708
TCM_006323 Theobroma cacao TCM_006323 N 0.708
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.708
Pm016629 Prunus mume Pm016629 N 0.708
29613.m000367 Ricinus communis 29613.m000367 N 0.708
30099.m001672 Ricinus communis 30099.m001672 N 0.708
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.708
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.708
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.708
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.708
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.708
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.708
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.708
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.708
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.708
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.708
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.708
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.708
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.708
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.708
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.708
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.708
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.708
evm.TU.supercontig_851.1 Carica papaya evm.TU.supercontig_851.1 N 0.708
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.708
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.708
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.708
MDP0000168914 Malus domestica MDP0000168914 N 0.708
MDP0000233925 Malus domestica MDP0000233925 N 0.708
MDP0000278770 Malus domestica MDP0000278770 N 0.708
MDP0000434703 Malus domestica MDP0000434703 I 0.708
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.708
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.708
Thhalv10015908m.g Eutrema salsugineum Thhalv10015908m.g N 0.708
chr1.CM0088.830.nc Lotus japonicus chr1.CM0088.830.nc N 0.708
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N 0.708
LjSGA_025167.1 Lotus japonicus LjSGA_025167.1 N 0.708