POPTR_0004s13590 (Populus trichocarpa)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 POPTR_0004s13590 T255819_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0004s13590.1 MADS box 16 63

Links

Other MADS box family TFs
Other Populus trichocarpa TFs

59 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava9834.m1 Manihot esculenta cassava9834.m1 N 0.938
29693.m002042 Ricinus communis 29693.m002042 N 0.896
Cla009921 Citrullus lanatus Cla009921 N 0.875
29693.m002041 Ricinus communis 29693.m002041 N 0.875
Cucsa.047600 Cucumis sativus Cucsa.047600 N 0.875
Ciclev10006559m.g Citrus clementina Ciclev10006559m.g N 0.875
Ciclev10007090m.g Citrus clementina Ciclev10007090m.g N 0.875
POPTR_0001s25850 Populus trichocarpa POPTR_0001s25850 N 0.854
Ciclev10006530m.g Citrus clementina Ciclev10006530m.g N 0.833
orange1.1g044532m.g Citrus sinensis orange1.1g044532m.g N 0.833
PRUPE_ppa024983mg Prunus persica PRUPE_ppa024983mg N 0.812
Pm008734 Prunus mume Pm008734 N 0.812
cassava9826.m1 Manihot esculenta cassava9826.m1 N 0.812
Ciclev10007104m.g Citrus clementina Ciclev10007104m.g N 0.812
Eucgr.E02870 Eucalyptus grandis Eucgr.E02870 N 0.812
POPTR_0009s05050 Populus trichocarpa POPTR_0009s05050 N 0.792
PRUPE_ppa021886mg Prunus persica PRUPE_ppa021886mg N 0.792
cassava39120.m1 Manihot esculenta cassava39120.m1 N 0.792
Ciclev10006503m.g Citrus clementina Ciclev10006503m.g N 0.792
Ciclev10006957m.g Citrus clementina Ciclev10006957m.g N 0.792
Ciclev10006958m.g Citrus clementina Ciclev10006958m.g N 0.792
orange1.1g038327m.g Citrus sinensis orange1.1g038327m.g N 0.778
Ciclev10006439m.g Citrus clementina Ciclev10006439m.g N 0.771
Ciclev10007010m.g Citrus clementina Ciclev10007010m.g N 0.771
Eucgr.E02872 Eucalyptus grandis Eucgr.E02872 N 0.771
Eucgr.L01236 Eucalyptus grandis Eucgr.L01236 N 0.771
SapurV1A.0619s0200 Salix purpurea SapurV1A.0619s0200 N 0.771
SapurV1A.1613s0060 Salix purpurea SapurV1A.1613s0060 N 0.771
SapurV1A.2714s0010 Salix purpurea SapurV1A.2714s0010 N 0.771
orange1.1g043113m.g Citrus sinensis orange1.1g043113m.g N 0.765
Ciclev10006708m.g Citrus clementina Ciclev10006708m.g N 0.750
cassava46357.m1 Manihot esculenta cassava46357.m1 N 0.729
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.729
Eucgr.E02824 Eucalyptus grandis Eucgr.E02824 N 0.729
Eucgr.E02827 Eucalyptus grandis Eucgr.E02827 N 0.729
Eucgr.E02829 Eucalyptus grandis Eucgr.E02829 N 0.729
Gorai.009G284300 Gossypium raimondii Gorai.009G284300 N 0.729
Lus10025872.g Linum usitatissimum Lus10025872.g N 0.729
Lus10035456.g Linum usitatissimum Lus10035456.g N 0.729
Ciclev10006588m.g Citrus clementina Ciclev10006588m.g N 0.721
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.711
F775_04223 Aegilops tauschii F775_04223 I 0.708
F775_43210 Aegilops tauschii F775_43210 I 0.708
PRUPE_ppa022905mg Prunus persica PRUPE_ppa022905mg N 0.708
TRAES3BF106100060CFD_g Triticum aestivum TRAES3BF106100060CFD_g I 0.708
Traes_6DL_609A01BD5 Triticum aestivum Traes_6DL_609A01BD5 I 0.708
Ciclev10006405m.g Citrus clementina Ciclev10006405m.g N 0.708
Ciclev10006500m.g Citrus clementina Ciclev10006500m.g N 0.708
Ciclev10007015m.g Citrus clementina Ciclev10007015m.g N 0.708
Gorai.010G132900 Gossypium raimondii Gorai.010G132900 N 0.708
Gorai.010G133300 Gossypium raimondii Gorai.010G133300 N 0.708
Lus10015271.g Linum usitatissimum Lus10015271.g N 0.708
Lus10031073.g Linum usitatissimum Lus10031073.g N 0.708
MDP0000696333 Malus domestica MDP0000696333 N 0.708
orange1.1g039494m.g Citrus sinensis orange1.1g039494m.g N 0.708
orange1.1g040485m.g Citrus sinensis orange1.1g040485m.g N 0.708
orange1.1g047467m.g Citrus sinensis orange1.1g047467m.g N 0.708
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.708
Gorai.009G333500 Gossypium raimondii Gorai.009G333500 N 0.700