CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ciclev10006405m.g
(
Citrus clementina
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
Ciclev10006405m.g
T257855_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ciclev10006405m
MADS box
3
50
KIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSF
Links
Other
MADS box
family TFs
Other
Citrus clementina
TFs
21 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
orange1.1g039494m.g
Citrus sinensis
orange1.1g039494m.g
N
1.000
Ciclev10006957m.g
Citrus clementina
Ciclev10006957m.g
N
0.854
orange1.1g044532m.g
Citrus sinensis
orange1.1g044532m.g
N
0.854
Ciclev10006530m.g
Citrus clementina
Ciclev10006530m.g
N
0.854
Ciclev10006439m.g
Citrus clementina
Ciclev10006439m.g
N
0.812
orange1.1g040485m.g
Citrus sinensis
orange1.1g040485m.g
N
0.792
Ciclev10007090m.g
Citrus clementina
Ciclev10007090m.g
N
0.792
Ciclev10006559m.g
Citrus clementina
Ciclev10006559m.g
N
0.792
Ciclev10007104m.g
Citrus clementina
Ciclev10007104m.g
N
0.750
29693.m002041
Ricinus communis
29693.m002041
N
0.750
Ciclev10006588m.g
Citrus clementina
Ciclev10006588m.g
N
0.744
cassava39120.m1
Manihot esculenta
cassava39120.m1
N
0.729
Ciclev10007015m.g
Citrus clementina
Ciclev10007015m.g
N
0.729
Ciclev10006958m.g
Citrus clementina
Ciclev10006958m.g
N
0.729
orange1.1g047467m.g
Citrus sinensis
orange1.1g047467m.g
N
0.729
Ciclev10006503m.g
Citrus clementina
Ciclev10006503m.g
N
0.729
POPTR_0004s13590
Populus trichocarpa
POPTR_0004s13590
N
0.708
cassava9834.m1
Manihot esculenta
cassava9834.m1
N
0.708
cassava9826.m1
Manihot esculenta
cassava9826.m1
N
0.708
POPTR_0001s25850
Populus trichocarpa
POPTR_0001s25850
N
0.708
Ciclev10006587m.g
Citrus clementina
Ciclev10006587m.g
N
0.700