cassava9826.m1 (Manihot esculenta)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 cassava9826.m1 T257252_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
cassava9826.m1 MADS box 20 67

Links

Other MADS box family TFs
Other Manihot esculenta TFs

47 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava39120.m1 Manihot esculenta cassava39120.m1 N 0.938
29693.m002041 Ricinus communis 29693.m002041 N 0.896
Ciclev10006559m.g Citrus clementina Ciclev10006559m.g N 0.875
Ciclev10007090m.g Citrus clementina Ciclev10007090m.g N 0.875
Ciclev10007104m.g Citrus clementina Ciclev10007104m.g N 0.833
POPTR_0001s25850 Populus trichocarpa POPTR_0001s25850 N 0.812
POPTR_0004s13590 Populus trichocarpa POPTR_0004s13590 N 0.812
Cla009921 Citrullus lanatus Cla009921 N 0.812
cassava46357.m1 Manihot esculenta cassava46357.m1 N 0.812
Cucsa.047600 Cucumis sativus Cucsa.047600 N 0.812
Ciclev10006503m.g Citrus clementina Ciclev10006503m.g N 0.812
Ciclev10006958m.g Citrus clementina Ciclev10006958m.g N 0.812
POPTR_0009s05050 Populus trichocarpa POPTR_0009s05050 N 0.792
cassava9834.m1 Manihot esculenta cassava9834.m1 N 0.792
Ciclev10006530m.g Citrus clementina Ciclev10006530m.g N 0.792
Ciclev10006957m.g Citrus clementina Ciclev10006957m.g N 0.792
orange1.1g044532m.g Citrus sinensis orange1.1g044532m.g N 0.792
PRUPE_ppa024983mg Prunus persica PRUPE_ppa024983mg N 0.771
Pm008734 Prunus mume Pm008734 N 0.771
29693.m002042 Ricinus communis 29693.m002042 N 0.771
Ciclev10006708m.g Citrus clementina Ciclev10006708m.g N 0.771
Ciclev10007010m.g Citrus clementina Ciclev10007010m.g N 0.771
Lus10025872.g Linum usitatissimum Lus10025872.g N 0.771
Ciclev10006439m.g Citrus clementina Ciclev10006439m.g N 0.750
orange1.1g040485m.g Citrus sinensis orange1.1g040485m.g N 0.750
Ciclev10006500m.g Citrus clementina Ciclev10006500m.g N 0.729
Ciclev10006740m.g Citrus clementina Ciclev10006740m.g N 0.729
Ciclev10006803m.g Citrus clementina Ciclev10006803m.g N 0.729
Ciclev10007015m.g Citrus clementina Ciclev10007015m.g N 0.729
Eucgr.E02872 Eucalyptus grandis Eucgr.E02872 N 0.729
Eucgr.L01236 Eucalyptus grandis Eucgr.L01236 N 0.729
Gorai.009G284300 Gossypium raimondii Gorai.009G284300 N 0.729
Gorai.012G147900 Gossypium raimondii Gorai.012G147900 N 0.729
orange1.1g047467m.g Citrus sinensis orange1.1g047467m.g N 0.729
SapurV1A.0619s0200 Salix purpurea SapurV1A.0619s0200 N 0.729
SapurV1A.1613s0060 Salix purpurea SapurV1A.1613s0060 N 0.729
SapurV1A.2714s0010 Salix purpurea SapurV1A.2714s0010 N 0.729
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.708
Ciclev10006405m.g Citrus clementina Ciclev10006405m.g N 0.708
Ciclev10006615m.g Citrus clementina Ciclev10006615m.g N 0.708
Eucgr.E02870 Eucalyptus grandis Eucgr.E02870 N 0.708
Gorai.010G132700 Gossypium raimondii Gorai.010G132700 N 0.708
Gorai.012G148000 Gossypium raimondii Gorai.012G148000 N 0.708
orange1.1g039494m.g Citrus sinensis orange1.1g039494m.g N 0.708
orange1.1g043113m.g Citrus sinensis orange1.1g043113m.g N 0.706
Ciclev10006546m.g Citrus clementina Ciclev10006546m.g N 0.700
Ciclev10006587m.g Citrus clementina Ciclev10006587m.g N 0.700