GLYMA18G05050 (Glycine max)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 GLYMA18G05050 T271728_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.892 0.957
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.892 0.957
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.892 0.957
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.803 0.870
OS08G0157600
M02330_2.00 		Oryza sativa
DNRTATCHN
NDGATAYNH		 PBM
Weirauch et al.(2014)
pTH7793 		0.794 0.891
LHY
M06997_2.00 		Arabidopsis thaliana
NWAAATATCT
AGATATTTWN		 Dap-seq
OMalley et al.(2016)
LHY1_col_a 		0.785 0.848
LHY
M06998_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LHY1_colamp_a 		0.785 0.848
CCA1
M00875_2.00 		Arabidopsis thaliana
NDNRWATCN
NGATWYNHN		 PBM
Franco-Zorrilla et al.(2014)
CCA1 		0.749 0.826
CCA1
M11039_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CCA1_Q5 		0.749 0.826
RVE5
M01079_2.00 		Arabidopsis thaliana
NWAATATCHN
NDGATATTWN		 PBM
Sullivan et al.(2014)
pTH7138 		0.740 0.696
RVE5
M07100_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At4g01280_col_a 		0.740 0.696
RVE5
M07101_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At4g01280_colamp_a 		0.740 0.696
RVE7
M01069_2.00 		Arabidopsis thaliana
NDHRWATCNN
NNGATWYDHN		 PBM
Sullivan et al.(2014)
pTH7081 		0.720 0.783
RVE7
M02286_2.00 		Arabidopsis thaliana
NDARTATCH
DGATAYTHN		 PBM
Weirauch et al.(2014)
pTH7277 		0.720 0.783
RVE7L
M07071_2.00 		Arabidopsis thaliana
NNNNWAAATATCWNN
NNWGATATTTWNNNN		 Dap-seq
OMalley et al.(2016)
AT3G10113_col_a 		0.720 0.783
RVE7
M07008_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
EPR1_colamp_a 		0.720 0.783
RVE7
M07009_2.00 		Arabidopsis thaliana
NWAAATATCTHN
NDAGATATTTWN		 Dap-seq
OMalley et al.(2016)
EPR1_col 		0.720 0.783
mybG
M02319_2.00 		Dictyostelium discoideum
WAATATCT
AGATATTW		 PBM
Weirauch et al.(2014)
pTH5362 		0.699 0.696
RVE8
M01074_2.00 		Arabidopsis thaliana
NNNRWATCNN
NNGATWYNNN		 PBM
Sullivan et al.(2014)
pTH7136 		0.665 0.674
RVE8
M07069_2.00 		Arabidopsis thaliana
NHNWAAATATCT
AGATATTTWNDN		 Dap-seq
OMalley et al.(2016)
At3g09600_col_a 		0.665 0.674
RVE8
M07070_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At3g09600_colamp_a 		0.665 0.674
PK02532.1
M02347_2.00 		Cannabis sativa
WAATATCTN
NAGATATTW		 PBM
Weirauch et al.(2014)
pTH9579 		0.665 0.652
RVE4
M07117_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LCL1_colamp_a 		0.665 0.652
RVE4
M07118_2.00 		Arabidopsis thaliana
NAAAATATCT
AGATATTTTN		 Dap-seq
OMalley et al.(2016)
LCL1_col 		0.665 0.652
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GLYMA18G05050.1 Myb 60 105

Links

Other Myb/SANT family TFs
Other Glycine max TFs

459 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TGA1B_TOBAC Nicotiana tabacum TGA1B_TOBAC D 0.000
e_gw1.25.198.1 Physcomitrella patens e_gw1.25.198.1 I 0.000
Eucgr.A02199 Eucalyptus grandis Eucgr.A02199 I 0.000
Ciclev10011169m.g Citrus clementina Ciclev10011169m.g I 0.000
Carubv10022722m.g Capsella rubella Carubv10022722m.g I 0.000
Cagra.1642s0060 Capsella grandiflora Cagra.1642s0060 I 0.000
Bostr.9345s0037 Boechera stricta Bostr.9345s0037 I 0.000
Aquca_009_00077 Aquilegia coerulea Aquca_009_00077 I 0.000
mgf013640m Mimulus guttatus mgf013640m I 0.000
mgf002378m Mimulus guttatus mgf002378m I 0.000
gw1.158.68.1 Physcomitrella patens gw1.158.68.1 I 0.000
evm.TU.supercontig_92.68 Carica papaya evm.TU.supercontig_92.68 I 0.000
Cucsa.337510 Cucumis sativus Cucsa.337510 I 0.000
cassava31134.valid.m1 Manihot esculenta cassava31134.valid.m1 I 0.000
cassava24522.valid.m1 Manihot esculenta cassava24522.valid.m1 I 0.000
29940.m000398 Ricinus communis 29940.m000398 I 0.000
Pm016493 Prunus mume Pm016493 I 0.000
Cla017717 Citrullus lanatus Cla017717 I 0.000
Ca_08103 Cicer arietinum Ca_08103 I 0.000
VIT_08s0040g00870 Vitis vinifera VIT_08s0040g00870 I 0.000
MDP0000299504 Malus domestica MDP0000299504 I 0.000
chr1.CM0269.100.nd Lotus japonicus chr1.CM0269.100.nd I 0.000
PK07115.1 Cannabis sativa PK07115.1 I 0.000
Thhalv10016317m.g Eutrema salsugineum Thhalv10016317m.g I 0.000
Thhalv10005827m.g Eutrema salsugineum Thhalv10005827m.g I 0.000
SapurV1A.1072s0100 Salix purpurea SapurV1A.1072s0100 I 0.000
SapurV1A.0159s0210 Salix purpurea SapurV1A.0159s0210 I 0.000
Pavir.J18543 Panicum virgatum Pavir.J18543 I 0.000
Pavir.J00385 Panicum virgatum Pavir.J00385 I 0.000
orange1.1g035544m.g Citrus sinensis orange1.1g035544m.g I 0.000
TRIUR3_02784 Triticum urartu TRIUR3_02784 I 0.000
MDP0000270677 Malus domestica MDP0000270677 I 0.000
MDP0000180785 Malus domestica MDP0000180785 I 0.000
MDP0000138811 Malus domestica MDP0000138811 I 0.000
Lus10038995.g Linum usitatissimum Lus10038995.g I 0.000
Lus10027290.g Linum usitatissimum Lus10027290.g I 0.000
Lus10012104.g Linum usitatissimum Lus10012104.g I 0.000
Lus10010440.g Linum usitatissimum Lus10010440.g I 0.000
Gorai.013G000800 Gossypium raimondii Gorai.013G000800 I 0.000
gene03633-v1.0-hybrid Fragaria vesca gene03633-v1.0-hybrid I 0.000
F775_10026 Aegilops tauschii F775_10026 I 0.000
MLOC_42759 Hordeum vulgare MLOC_42759 I 0.000
LPERR05G13000 Leersia perrieri LPERR05G13000 I 0.000
GSMUA_Achr3G24960_001 Musa acuminata GSMUA_Achr3G24960_001 I 0.000
GSMUA_Achr11G25190_001 Musa acuminata GSMUA_Achr11G25190_001 I 0.000
GSMUA_Achr10G01440_001 Musa acuminata GSMUA_Achr10G01440_001 I 0.000
GRMZM2G045236 Zea mays GRMZM2G045236 I 0.000
GLYMA19G30681 Glycine max GLYMA19G30681 I 0.000
GLYMA03G27865 Glycine max GLYMA03G27865 I 0.000
BZIP49 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001722 I 0.000
MLOC_58500 Hordeum vulgare MLOC_58500 I 0.000
F775_09858 Aegilops tauschii F775_09858 I 0.000
BRADI2G25400 Brachypodium distachyon BRADI2G25400 I 0.000
Bra034147 Brassica rapa Bra034147 I 0.000
Bra023224 Brassica rapa Bra023224 I 0.000
Bra016959 Brassica rapa Bra016959 I 0.000
Bo4g190610 Brassica oleracea Bo4g190610 I 0.000
Bo4g012880 Brassica oleracea Bo4g012880 I 0.000
BGIOSGA018059 Oryza indica BGIOSGA018059 I 0.000
BZIP49 Arabidopsis thaliana AT3G56660 I 0.000
POPTR_0006s03300 Populus trichocarpa POPTR_0006s03300 I 0.000
TRIUR3_00571 Triticum urartu TRIUR3_00571 I 0.000
Traes_2DS_5FA136FBB Triticum aestivum Traes_2DS_5FA136FBB I 0.000
TCM_023889 Theobroma cacao TCM_023889 I 0.000
Solyc10g078290.1 Solanum lycopersicum Solyc10g078290.1 I 0.000
Si021442m.g Setaria italica Si021442m.g I 0.000
BZIP17 Arabidopsis lyrata scaffold_402899.1 I 0.000
Sb09g020320 Sorghum bicolor Sb09g020320 I 0.000
PRUPE_ppa002181mg Prunus persica PRUPE_ppa002181mg I 0.000
POPTR_0016s03220 Populus trichocarpa POPTR_0016s03220 I 0.000
AMTR_s00101p00121930 Amborella trichopoda AMTR_s00101p00121930 I 0.000
PGSC0003DMG400007175 Solanum tuberosum PGSC0003DMG400007175 I 0.000
BZIP39 Oryza sativa OS05G0411300 I 0.000
ORUFI05G17550 Oryza rufipogon ORUFI05G17550 I 0.000
ORGLA05G0141100 Oryza glaberrima ORGLA05G0141100 I 0.000
OPUNC05G14460 Oryza punctata OPUNC05G14460 I 0.000
ONIVA05G17010 Oryza nivara ONIVA05G17010 I 0.000
OGLUM05G17320 Oryza glumaepatula OGLUM05G17320 I 0.000
OB05G24300 Oryza brachyantha OB05G24300 I 0.000
MTR_7g088890 Medicago truncatula MTR_7g088890 I 0.000