MYB3R-4 (Vitis vinifera)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 VIT_04s0008g03790 T281923_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q948S5_TOBAC
M11074_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA2_01 		0.687 0.788
PK12011.1
M01279_2.00 		Cannabis sativa
HAACGGHHNN
NNDDCCGTTD		 PBM
Lambert et al.(2019)
pTH11423 		0.670 0.781
PC-MYB1
M07110_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R1_col_a 		0.665 0.723
PC-MYB1
M07111_2.00 		Arabidopsis thaliana
DWHNTDRCCGTTR
YAACGGYHANDWH		 Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a 		0.665 0.723
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
VIT_04s0008g03790.t01 Myb 17 63
VIT_04s0008g03790.t01 Myb 69 115
VIT_04s0008g03790.t01 Myb 121 163

Links

Other Myb/SANT family TFs
Other Vitis vinifera TFs

44 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PC-MYB1 Arabidopsis thaliana AT4G32730 D 0.665
PK12011.1 Cannabis sativa PK12011.1 D 0.670
Q948S5_TOBAC Nicotiana tabacum Q948S5_TOBAC D 0.687
evm.TU.supercontig_78.76 Carica papaya evm.TU.supercontig_78.76 I 0.688
29794.m003447 Ricinus communis 29794.m003447 I 0.691
Cucsa.161430 Cucumis sativus Cucsa.161430 I 0.704
Cucsa.311420 Cucumis sativus Cucsa.311420 I 0.696
mgf006384m Mimulus guttatus mgf006384m I 0.677
mgf008601m Mimulus guttatus mgf008601m I 0.689
Aquca_013_00366 Aquilegia coerulea Aquca_013_00366 I 0.670
Bostr.7867s1124 Boechera stricta Bostr.7867s1124 I 0.665
Ciclev10007316m.g Citrus clementina Ciclev10007316m.g I 0.704
Eucgr.C02893 Eucalyptus grandis Eucgr.C02893 I 0.704
Pm005124 Prunus mume Pm005124 I 0.688
gene08793-v1.0-hybrid Fragaria vesca gene08793-v1.0-hybrid I 0.710
Gorai.009G051000 Gossypium raimondii Gorai.009G051000 I 0.701
Gorai.010G110000 Gossypium raimondii Gorai.010G110000 I 0.701
Lus10022136.g Linum usitatissimum Lus10022136.g I 0.664
MDP0000179225 Malus domestica MDP0000179225 I 0.684
MDP0000295807 Malus domestica MDP0000295807 I 0.676
SapurV1A.0283s0180 Salix purpurea SapurV1A.0283s0180 I 0.704
SapurV1A.0446s0220 Salix purpurea SapurV1A.0446s0220 I 0.675
LjT22I05.60.nd Lotus japonicus LjT22I05.60.nd I 0.690
POPTR_0006s25840 Populus trichocarpa POPTR_0006s25840 I 0.704
Bo1g010040 Brassica oleracea Bo1g010040 I 0.666
Bo7g115810 Brassica oleracea Bo7g115810 I 0.662
Bra011376 Brassica rapa Bra011376 I 0.666
PC-MYB1 Arabidopsis lyrata fgenesh2_kg.7__866__AT4G32730.2 I 0.665
GLYMA04G08550 Glycine max GLYMA04G08550 I 0.682
GLYMA06G08660 Glycine max GLYMA06G08660 I 0.682
GLYMA14G21523 Glycine max GLYMA14G21523 I 0.679
GLYMA17G26240 Glycine max GLYMA17G26240 I 0.661
MTR_1g026870 Medicago truncatula MTR_1g026870 I 0.706
MTR_3g110028 Medicago truncatula MTR_3g110028 I 0.701
Cla023357 Citrullus lanatus Cla023357 I 0.696
POPTR_0018s00710 Populus trichocarpa POPTR_0018s00710 I 0.698
PRUPE_ppa000676mg Prunus persica PRUPE_ppa000676mg I 0.690
Solyc08g068320.2 Solanum lycopersicum Solyc08g068320.2 I 0.691
TCM_047091 Theobroma cacao TCM_047091 I 0.704
VIT_04s0008g03780 Vitis vinifera VIT_04s0008g03780 I 0.678
VIT_11s0016g03750 Vitis vinifera VIT_11s0016g03750 I 0.702
Ca_01884 Cicer arietinum Ca_01884 I 0.709
Ca_14925 Cicer arietinum Ca_14925 I 0.691
Cla022565 Citrullus lanatus Cla022565 I 0.704