Cla018126 (Citrullus lanatus)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cla018126 T283288_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RVE8
M01074_2.00 		Arabidopsis thaliana
NNNRWATCNN
NNGATWYNNN		 PBM
Sullivan et al.(2014)
pTH7136 		0.909 1.000
RVE8
M07069_2.00 		Arabidopsis thaliana
NHNWAAATATCT
AGATATTTWNDN		 Dap-seq
OMalley et al.(2016)
At3g09600_col_a 		0.909 1.000
RVE8
M07070_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At3g09600_colamp_a 		0.909 1.000
RVE4
M07117_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LCL1_colamp_a 		0.909 0.978
RVE4
M07118_2.00 		Arabidopsis thaliana
NAAAATATCT
AGATATTTTN		 Dap-seq
OMalley et al.(2016)
LCL1_col 		0.909 0.978
PK02532.1
M02347_2.00 		Cannabis sativa
WAATATCTN
NAGATATTW		 PBM
Weirauch et al.(2014)
pTH9579 		0.901 0.957
RVE6
M01081_2.00 		Arabidopsis thaliana
AATATCTD
HAGATATT		 PBM
Sullivan et al.(2014)
pTH7151 		0.891 0.935
RVE6
M07138_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At5g52660_col_a 		0.891 0.935
RVE6
M07139_2.00 		Arabidopsis thaliana
NNNWAAATATCT
AGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
At5g52660_colamp_a 		0.891 0.935
mybG
M02319_2.00 		Dictyostelium discoideum
WAATATCT
AGATATTW		 PBM
Weirauch et al.(2014)
pTH5362 		0.818 0.891
RVE5
M01079_2.00 		Arabidopsis thaliana
NWAATATCHN
NDGATATTWN		 PBM
Sullivan et al.(2014)
pTH7138 		0.795 0.870
RVE5
M07100_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At4g01280_col_a 		0.795 0.870
RVE5
M07101_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At4g01280_colamp_a 		0.795 0.870
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.706 0.717
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.670 0.674
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.670 0.674
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.670 0.674
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla018126 Myb 35 80

Links

Other Myb/SANT family TFs
Other Citrullus lanatus TFs

334 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30204.m001750 Ricinus communis 30204.m001750 N 0.000
Eucgr.K02162 Eucalyptus grandis Eucgr.K02162 N 0.000
Eucgr.H00795 Eucalyptus grandis Eucgr.H00795 N 0.000
Ciclev10018446m.g Citrus clementina Ciclev10018446m.g N 0.000
Carubv10016123m.g Capsella rubella Carubv10016123m.g N 0.000
Carubv10015863m.g Capsella rubella Carubv10015863m.g N 0.000
Bostr.2021s0055 Boechera stricta Bostr.2021s0055 N 0.000
Bostr.19424s0133 Boechera stricta Bostr.19424s0133 N 0.000
Cucsa.078210 Cucumis sativus Cucsa.078210 N 0.000
cassava349.valid.m1 Manihot esculenta cassava349.valid.m1 N 0.000
evm.TU.supercontig_8.144 Carica papaya evm.TU.supercontig_8.144 N 0.000
Pm020347 Prunus mume Pm020347 N 0.000
VIT_07s0005g06680 Vitis vinifera VIT_07s0005g06680 N 0.000
TRIUR3_27363 Triticum urartu TRIUR3_27363 N 0.000
TRIUR3_17785 Triticum urartu TRIUR3_17785 N 0.000
Traes_3DL_FC1A52B36 Triticum aestivum Traes_3DL_FC1A52B36 N 0.000
Traes_3AL_06889C77D Triticum aestivum Traes_3AL_06889C77D N 0.000
Traes_1DL_7773A9BFB Triticum aestivum Traes_1DL_7773A9BFB N 0.000
TCM_002924 Theobroma cacao TCM_002924 N 0.000
Solyc09g060080.2 Solanum lycopersicum Solyc09g060080.2 N 0.000
orange1.1g000147m.g Citrus sinensis orange1.1g000147m.g N 0.000
PDK_20s1355591g002 Phoenix dactylifera PDK_20s1355591g002 N 0.000
chr1.LjT36F23.70.nd Lotus japonicus chr1.LjT36F23.70.nd N 0.000
PK23540.1 Cannabis sativa PK23540.1 N 0.000
Thhalv10002368m.g Eutrema salsugineum Thhalv10002368m.g N 0.000
SapurV1A.0342s0100 Salix purpurea SapurV1A.0342s0100 N 0.000
SapurV1A.0135s0340 Salix purpurea SapurV1A.0135s0340 N 0.000
Pavir.J18859 Panicum virgatum Pavir.J18859 N 0.000
Pavir.J03231 Panicum virgatum Pavir.J03231 N 0.000
Pavir.J00429 Panicum virgatum Pavir.J00429 N 0.000
Solyc06g083420.1 Solanum lycopersicum Solyc06g083420.1 N 0.000
MDP0000250529 Malus domestica MDP0000250529 N 0.000
MDP0000155726 Malus domestica MDP0000155726 N 0.000
Lus10022788.g Linum usitatissimum Lus10022788.g N 0.000
Lus10011850.g Linum usitatissimum Lus10011850.g N 0.000
Gorai.007G155000 Gossypium raimondii Gorai.007G155000 N 0.000
Gorai.004G226000 Gossypium raimondii Gorai.004G226000 N 0.000
Gorai.001G233800 Gossypium raimondii Gorai.001G233800 N 0.000
Gorai.001G187100 Gossypium raimondii Gorai.001G187100 N 0.000
gene17608-v1.0-hybrid Fragaria vesca gene17608-v1.0-hybrid N 0.000
BRADI2G14372 Brachypodium distachyon BRADI2G14372 N 0.000
GRMZM2G350684 Zea mays GRMZM2G350684 N 0.000
GRMZM2G018048 Zea mays GRMZM2G018048 N 0.000
GLYMA18G36628 Glycine max GLYMA18G36628 N 0.000
GLYMA16G14060 Glycine max GLYMA16G14060 N 0.000
GLYMA08G46710 Glycine max GLYMA08G46710 N 0.000
GLYMA03G18725 Glycine max GLYMA03G18725 N 0.000
fgenesh2_kg.3__2706__AT3G24880.1 Arabidopsis lyrata fgenesh2_kg.3__2706__AT3G24880.1 N 0.000
F775_03250 Aegilops tauschii F775_03250 N 0.000
BRADI2G41720 Brachypodium distachyon BRADI2G41720 N 0.000
GSMUA_Achr11G13340_001 Musa acuminata GSMUA_Achr11G13340_001 N 0.000
Bra032689 Brassica rapa Bra032689 N 0.000
Bra013238 Brassica rapa Bra013238 N 0.000
Bo7g031610 Brassica oleracea Bo7g031610 N 0.000
Bo4g133290 Brassica oleracea Bo4g133290 N 0.000
Bo3g083740 Brassica oleracea Bo3g083740 N 0.000
BGIOSGA027556 Oryza indica BGIOSGA027556 N 0.000
EAF1A Arabidopsis thaliana AT3G24880 N 0.000
EAF1B Arabidopsis thaliana AT3G24870 N 0.000
AMTR_s00045p00026940 Amborella trichopoda AMTR_s00045p00026940 N 0.000
ONIVA08G04510 Oryza nivara ONIVA08G04510 N 0.000
Si020947m.g Setaria italica Si020947m.g N 0.000
Si000015m.g Setaria italica Si000015m.g N 0.000
Sb03g025920 Sorghum bicolor Sb03g025920 N 0.000
PRUPE_ppa000065mg Prunus persica PRUPE_ppa000065mg N 0.000
POPTR_0014s19020 Populus trichocarpa POPTR_0014s19020 N 0.000
POPTR_0002s24490 Populus trichocarpa POPTR_0002s24490 N 0.000
OS08G0177300 Oryza sativa OS08G0177300 N 0.000
ORUFI08G05170 Oryza rufipogon ORUFI08G05170 N 0.000
OPUNC08G04510 Oryza punctata OPUNC08G04510 N 0.000
AMTR_s00029p00248140 Amborella trichopoda AMTR_s00029p00248140 N 0.000
OMERI08G04670 Oryza meridionalis OMERI08G04670 N 0.000
OLONG_015531 Oryza longistaminata OLONG_015531 N 0.000
OGLUM08G04910 Oryza glumaepatula OGLUM08G04910 N 0.000
OBART08G04660 Oryza barthii OBART08G04660 N 0.000
OB01G30180 Oryza brachyantha OB01G30180 N 0.000
MTR_7g056603 Medicago truncatula MTR_7g056603 N 0.000
MLOC_60761 Hordeum vulgare MLOC_60761 N 0.000
LPERR11G18970 Leersia perrieri LPERR11G18970 N 0.000
GSMUA_Achr1G21080_001 Musa acuminata GSMUA_Achr1G21080_001 N 0.000