CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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cassava19706.m1
(
Manihot esculenta
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
cassava19706.m1
T284055_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB98
M02301_2.00
Arabidopsis thaliana
NNGTAACGKMN
NKMCGTTACNN
PBM
Weirauch et al.(2014)
pTH8148
0.710
0.849
MYB98
M07108_2.00
Arabidopsis thaliana
DWWWHGTAACGKWHD
HDWMCGTTACDWWWH
Dap-seq
OMalley et al.(2016)
MYB98_col_a
0.710
0.849
MYB118
M07087_2.00
Arabidopsis thaliana
DHWDHRDMCGTTACDWW
WWHGTAACGKHYDHWDH
Dap-seq
OMalley et al.(2016)
MYB118_col_a
0.708
0.763
MYB118
M07088_2.00
Arabidopsis thaliana
DWWWYGTAACGKHYR
YRDMCGTTACRWWWH
Dap-seq
OMalley et al.(2016)
MYB118_colamp_a
0.708
0.763
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava19706.m1
Myb
180
226
KGQWTIEEDRLLTQLVEQYGVRKWSHIAQMLPGRIGKQCRERWHNHL
cassava19706.m1
Myb
232
277
KDMWSEDEDKILIHAHAEIGNKWAEIAKRLPGRTENSIKNHWNATK
Links
Other
Myb/SANT
family TFs
Other
Manihot esculenta
TFs
163 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
HMGB9
Arabidopsis thaliana
AT1G76110
D
0.000
30170.m014303
Ricinus communis
30170.m014303
I
0.000
Thhalv10018826m.g
Eutrema salsugineum
Thhalv10018826m.g
I
0.000
cassava21037.m1
Manihot esculenta
cassava21037.m1
I
0.000
Cucsa.271870
Cucumis sativus
Cucsa.271870
I
0.000
Bostr.20129s0046
Boechera stricta
Bostr.20129s0046
I
0.000
Cagra.0799s0081
Capsella grandiflora
Cagra.0799s0081
I
0.000
Carubv10020597m.g
Capsella rubella
Carubv10020597m.g
I
0.000
Ciclev10001816m.g
Citrus clementina
Ciclev10001816m.g
I
0.000
Eucgr.F03526
Eucalyptus grandis
Eucgr.F03526
I
0.000
evm.TU.supercontig_26.248
Carica papaya
evm.TU.supercontig_26.248
I
0.000
gene08596-v1.0-hybrid
Fragaria vesca
gene08596-v1.0-hybrid
I
0.000
Gorai.009G190400
Gossypium raimondii
Gorai.009G190400
I
0.000
Lus10021228.g
Linum usitatissimum
Lus10021228.g
I
0.000
MDP0000204804
Malus domestica
MDP0000204804
I
0.000
orange1.1g020305m.g
Citrus sinensis
orange1.1g020305m.g
I
0.000
SapurV1A.0573s0150
Salix purpurea
SapurV1A.0573s0150
I
0.000
Ca_04857
Cicer arietinum
Ca_04857
I
0.000
Bo6g120140
Brassica oleracea
Bo6g120140
I
0.000
Bra015787
Brassica rapa
Bra015787
I
0.000
fgenesh2_kg.2__1891__AT1G76110.1
Arabidopsis lyrata
fgenesh2_kg.2__1891__AT1G76110.1
I
0.000
GLYMA04G02210
Glycine max
GLYMA04G02210
I
0.000
GSMUA_Achr1G14960_001
Musa acuminata
GSMUA_Achr1G14960_001
I
0.000
GSMUA_Achr3G00570_001
Musa acuminata
GSMUA_Achr3G00570_001
I
0.000
GSMUA_Achr8G34160_001
Musa acuminata
GSMUA_Achr8G34160_001
I
0.000
MTR_3g114920
Medicago truncatula
MTR_3g114920
I
0.000
PGSC0003DMG400029327
Solanum tuberosum
PGSC0003DMG400029327
I
0.000
POPTR_0005s26800
Populus trichocarpa
POPTR_0005s26800
I
0.000
PRUPE_ppa009338mg
Prunus persica
PRUPE_ppa009338mg
I
0.000
Solyc12g094440.1
Solanum lycopersicum
Solyc12g094440.1
I
0.000
TCM_034318
Theobroma cacao
TCM_034318
I
0.000
VIT_18s0001g00660
Vitis vinifera
VIT_18s0001g00660
I
0.000
Pm006137
Prunus mume
Pm006137
I
0.000
mgf019342m
Mimulus guttatus
mgf019342m
N
0.000
AMTR_s00001p00177580
Amborella trichopoda
AMTR_s00001p00177580
N
0.000