Carubv10001525m.g (Capsella rubella)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Carubv10001525m.g T286220_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SRM1
M02307_2.00 		Arabidopsis thaliana
NNHNATCNN
NNGATNDNN		 PBM
Weirauch et al.(2014)
pTH7080 		0.853 0.967
SRM1
M07121_2.00 		Arabidopsis thaliana
YCTTATCYWHW
WDWRGATAAGR		 Dap-seq
OMalley et al.(2016)
At5g08520_colamp_a 		0.853 0.967
SRM1
M07122_2.00 		Arabidopsis thaliana
YCTTATCYWHWWH
DWWDWRGATAAGR		 Dap-seq
OMalley et al.(2016)
At5g08520_col_b 		0.853 0.967
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10001525m Myb 119 164
Carubv10001565m Myb 119 164

Links

Other Myb/SANT family TFs
Other Capsella rubella TFs

52 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
EBF2 Homo sapiens ENSG00000221818 D
Ebf4 Mus musculus ENSMUSG00000053552 D
Ebf2 Mus musculus ENSMUSG00000022053 D
Alligator_sinensis_CCG000599.1 Alligator sinensis Alligator_sinensis_CCG000599.1 I
Alligator_sinensis_CCG017610.1 Alligator sinensis Alligator_sinensis_CCG017610.1 I
Afo_R003215 Aptenodytes forsteri Afo_R003215 I
SMAR000842 Strigamia maritima SMAR000842 I
SINV26263 Solenopsis invicta SINV26263 I
RPRC005513 Rhodnius prolixus RPRC005513 I
MESCA011260 Megaselia scalaris MESCA011260 I
LotgiG225788 Lottia gigantea LotgiG225788 I
ISCW021819 Ixodes scapularis ISCW021819 I
HelroG147258 Helobdella robusta HelroG147258 I
ENSXMAG00000006633 Xiphophorus maculatus ENSXMAG00000006633 I
EBF2 Vicugna pacos ENSVPAG00000015422 I
ENSTNIG00000017063 Tetraodon nigroviridis ENSTNIG00000017063 I
EBF2 Taeniopygia guttata ENSTGUG00000004267 I
ENSSTOG00000026314 Ictidomys tridecemlineatus ENSSTOG00000026314 I
ENSSSCG00000025433 Sus scrofa ENSSSCG00000025433 I
ENSSSCG00000025415 Sus scrofa ENSSSCG00000025415 I
EBF2 Sus scrofa ENSSSCG00000009655 I
Ebf1 Rattus norvegicus ENSRNOG00000028845 I
Ebf2 Rattus norvegicus ENSRNOG00000011548 I
EBF2 Pteropus vampyrus ENSPVAG00000024254 I
ENSPTRG00000039291 Pan troglodytes ENSPTRG00000039291 I
ebf2.S Xenopus laevis XB-GENE-971141 I
TRE_0001373801 Trichobilharzia regenti TRE_0001373801 I
SMTD_0000506201 Schistosoma mattheei SMTD_0000506201 I
SBAD_0000456201 Soboliphyme baturini SBAD_0000456201 I
nRc.2.0.1.g06532 Romanomermis culicivorax nRc.2.0.1.g06532 I
D918_06798 Trichuris suis D918_06798 I
MDOA011385 Musca domestica MDOA011385 I
ASTEI06455 Anopheles stephensi ASTEI06455 I
AMEM016790 Anopheles merus AMEM016790 I
AFUN004907 Anopheles funestus AFUN004907 I
ACOM041538 Anopheles coluzzii ACOM041538 I
AARA002866 Anopheles arabiensis AARA002866 I
ENSPPYG00000018454 Pongo abelii ENSPPYG00000018454 I
LCUP013861 Lucilia cuprina LCUP013861 I
Sakowv30011013m.g Saccoglossus kowalevskii Sakowv30011013m.g I
fgenesh2_pm.scaffold_381000001 Branchiostoma floridae fgenesh2_pm.scaffold_381000001 I
Pvit_04283 Pogona vitticeps Pvit_04283 I
Ogr13832 Ophisaurus gracilis Ogr13832 I
Ogr09591 Ophisaurus gracilis Ogr09591 I
Myotis_brandtii_Ebf3_10024822 Myotis brandtii Myotis_brandtii_Ebf3_10024822 I
Myotis_brandtii_EBF3_10024821 Myotis brandtii Myotis_brandtii_EBF3_10024821 I
Myotis_brandtii_Ebf2_10005809 Myotis brandtii Myotis_brandtii_Ebf2_10005809 I
Hsal_03265--XP_394171.3_APIME Harpegnathos saltator Hsal_03265--XP_394171.3_APIME I
EBF2 Cavia porcellus ENSCPOG00000001463 I
EBF2 Gorilla gorilla ENSGGOG00000001585 I
EBF2 Gallus gallus ENSGALG00000000242 I
EBF1 Gasterosteus aculeatus ENSGACG00000020458 I
ENSFALG00000011234 Ficedula albicollis ENSFALG00000011234 I
EBF3 Echinops telfairi ENSETEG00000014060 I
EBF2 Equus caballus ENSECAG00000014179 I
EBF1 Equus caballus ENSECAG00000007964 I
EBF2 Dasypus novemcinctus ENSDNOG00000040488 I
ENSDNOG00000036735 Dasypus novemcinctus ENSDNOG00000036735 I
si:ch211-51e8.2 Danio rerio ENSDARG00000092635 I
ENSCSAG00000016062 Chlorocebus sabaeus ENSCSAG00000016062 I
ENSLACG00000001966 Latimeria chalumnae ENSLACG00000001966 I
EBF2 Callithrix jacchus ENSCJAG00000019921 I
EBF2 Canis familiaris ENSCAFG00000008918 I
EBF2 Bos taurus ENSBTAG00000040390 I
ENSAPLG00000009260 Anas platyrhynchos ENSAPLG00000009260 I
ENSAMXG00000021198 Astyanax mexicanus ENSAMXG00000021198 I
ENSAMXG00000012646 Astyanax mexicanus ENSAMXG00000012646 I
ENSAMXG00000002783 Astyanax mexicanus ENSAMXG00000002783 I
ENSAMEG00000000326 Ailuropoda melanoleuca ENSAMEG00000000326 I
ENSACAG00000005898 Anolis carolinensis ENSACAG00000005898 I
ENSACAG00000003052 Anolis carolinensis ENSACAG00000003052 I
ENSNLEG00000016189 Nomascus leucogenys ENSNLEG00000016189 I
ENSPSIG00000016837 Pelodiscus sinensis ENSPSIG00000016837 I
ACYPI060841 Acyrthosiphon pisum ACYPI060841 I
ENSPMAG00000003301 Petromyzon marinus ENSPMAG00000003301 I
ENSPFOG00000023105 Poecilia formosa ENSPFOG00000023105 I
ENSPFOG00000002559 Poecilia formosa ENSPFOG00000002559 I
ENSPANG00000020231 Papio anubis ENSPANG00000020231 I
EBF2 Otolemur garnettii ENSOGAG00000010783 I
EBF2 Oryctolagus cuniculus ENSOCUG00000011972 I
ENSOARG00000012916 Ovis aries ENSOARG00000012916 I
ENSOARG00000009825 Ovis aries ENSOARG00000009825 I
EBF2 Pan troglodytes ENSPTRG00000003058 I
ENSMPUG00000013409 Mustela putorius furo ENSMPUG00000013409 I
ENSMPUG00000003195 Mustela putorius furo ENSMPUG00000003195 I
ENSMODG00000016695 Monodelphis domestica ENSMODG00000016695 I
ENSMLUG00000025817 Myotis lucifugus ENSMLUG00000025817 I
EBF2 Myotis lucifugus ENSMLUG00000011509 I
EBF2 Meleagris gallopavo ENSMGAG00000000791 I
ENSMEUG00000009275 Macropus eugenii ENSMEUG00000009275 I
EBF2 Loxodonta africana ENSLAFG00000022465 I
EBF1 Loxodonta africana ENSLAFG00000017522 I
ENSLACG00000017503 Latimeria chalumnae ENSLACG00000017503 I