Pavir.Ba03246 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.Ba03246 T289024_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G05090
M02305_2.00 		Arabidopsis thaliana
NHAGATHCKNN
NNMGDATCTDN		 PBM
Weirauch et al.(2014)
pTH7104 		0.827 0.957
ARR14
M00873_2.00 		Arabidopsis thaliana
NNAGATHCKS
SMGDATCTNN		 PBM
Franco-Zorrilla et al.(2014)
ARR14 		0.662 0.660
ARR14
M02293_2.00 		Arabidopsis thaliana
NAGATHYBNN
NNVRDATCTN		 PBM
Weirauch et al.(2014)
pTH7531 		0.662 0.660
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ba03246.1.p Myb 88 138

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

304 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
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CGI_10013213 Crassostrea gigas CGI_10013213 I
CORT_0B02840 Candida orthopsilosis CORT_0B02840 I
CRE00191 Caenorhabditis remanei CRE00191 I
EDEG_02526 Edhazardia aedis EDEG_02526 I
ENSCAFG00000023214 Canis familiaris ENSCAFG00000023214 I
Esx1 Rattus norvegicus ENSRNOG00000048011 I
GLOINDRAFT_4254 Rhizophagus irregularis GLOINDRAFT_4254 I
H311_01337 Anncaliia algerae H311_01337 I
H311_02306 Anncaliia algerae H311_02306 I
Sakowv30037698m.g Saccoglossus kowalevskii Sakowv30037698m.g I