CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

ORGLA01G0213300 *(Oryza glaberrima)* NAC/NAM
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF02365 (NAM)	IPR003441	ORGLA01G0213300	T294736_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
PK27085.1 M01293_2.00	Cannabis sativa	AATTTATT	AATAAATT	PBM Lambert et al.(2019) pTH11262	0.981	0.816
anac075 M07223_2.00	Arabidopsis thaliana	CTTSWNNNWYAMGYT	ARCKTRWNNNWSAAG	Dap-seq OMalley et al.(2016) ANAC075_col_a	0.981	0.816
NAC010 M07167_2.00	Arabidopsis thaliana	NWWNCTTSWNNNWYAMGHHWYH	DRWDDCKTRWNNNWSAAGNWWN	Dap-seq OMalley et al.(2016) SND3_colamp_a	0.976	0.781
NAC010 M07168_2.00	Arabidopsis thaliana	CKTSWNNNWYAMGYW	WRCKTRWNNNWSAMG	Dap-seq OMalley et al.(2016) SND3_col_b	0.976	0.781
NAC073 M07221_2.00	Arabidopsis thaliana	CTTSWNNNWYAMGYH	DRCKTRWNNNWSAAG	Dap-seq OMalley et al.(2016) SND2_col_a	0.963	0.789
NAC073 M07222_2.00	Arabidopsis thaliana	CKTSWNNNWYACGYW	WRCGTRWNNNWSAMG	Dap-seq OMalley et al.(2016) SND2_colamp_a	0.963	0.789
PK11990.1 M01290_2.00	Cannabis sativa	DNAHDNHDNN	NNHDNHDTNH	PBM Lambert et al.(2019) pTH11336	0.926	0.772
For this family, TFs with SR scores > 0.870* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ORGLA01G0213300.1	NAC/NAM	72	211	PAGVKFDPTDQELLEHLEGKARPDARKLHPLIDEFIPTIEGENGICYTHPERLPGVGKDGLIRHFFHRPSKAYTTGTRKRRKVHTDEQGGETRWHKTGKTRPVFTGGKLKGYKKILVLYTNYGKQRKPEKTNWVMHQYHL

Links
Other NAC/NAM family TFs
Other *Oryza glaberrima* TFs