POPTR_0003s16490 (Populus trichocarpa)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02365 (NAM) IPR003441 POPTR_0003s16490 T295235_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NAC083
M02374_2.00 		Arabidopsis thaliana
WYACGYAANN
NNTTRCGTRW		 PBM
Weirauch et al.(2014)
pTH7308 		0.931 0.868
NAC083
M07230_2.00 		Arabidopsis thaliana
TRCKTRWNNNDYAMG
CKTRHNNNWYAMGYA		 Dap-seq
OMalley et al.(2016)
ANAC083_colamp_a 		0.931 0.868
NAC083
M07231_2.00 		Arabidopsis thaliana
TTNCKTRWNNHDYACGYWA
TWRCGTRHDNNWYAMGNAA		 Dap-seq
OMalley et al.(2016)
ANAC083_col_v3a 		0.931 0.868
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0003s16490.1 NAC/NAM 15 138

Links

Other NAC/NAM family TFs
Other Populus trichocarpa TFs

62 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NAC083 Arabidopsis thaliana AT5G13180 D 0.931
cassava1138.valid.m1 Manihot esculenta cassava1138.valid.m1 I 0.951
chr1.CM0017.80.nc Lotus japonicus chr1.CM0017.80.nc I 0.937
cassava12891.valid.m1 Manihot esculenta cassava12891.valid.m1 I 0.949
Cucsa.349370 Cucumis sativus Cucsa.349370 I 0.956
Aquca_011_00050 Aquilegia coerulea Aquca_011_00050 I 0.919
Aquca_021_00051 Aquilegia coerulea Aquca_021_00051 I 0.946
Bostr.23794s0753 Boechera stricta Bostr.23794s0753 I 0.905
Bostr.2902s0053 Boechera stricta Bostr.2902s0053 I 0.926
Cagra.0596s0010 Capsella grandiflora Cagra.0596s0010 I 0.926
Carubv10002548m.g Capsella rubella Carubv10002548m.g I 0.924
Ciclev10032547m.g Citrus clementina Ciclev10032547m.g I 0.951
Eucgr.B03537 Eucalyptus grandis Eucgr.B03537 I 0.941
Eucgr.H03387 Eucalyptus grandis Eucgr.H03387 I 0.933
evm.TU.supercontig_99.63 Carica papaya evm.TU.supercontig_99.63 I 0.922
Gorai.005G195300 Gossypium raimondii Gorai.005G195300 I 0.941
Gorai.012G125500 Gossypium raimondii Gorai.012G125500 I 0.951
Lus10001809.g Linum usitatissimum Lus10001809.g I 0.922
Lus10002581.g Linum usitatissimum Lus10002581.g I 0.920
MDP0000126517 Malus domestica MDP0000126517 I 0.947
MDP0000130123 Malus domestica MDP0000130123 I 0.947
MDP0000147080 Malus domestica MDP0000147080 I 0.889
orange1.1g030727m.g Citrus sinensis orange1.1g030727m.g I 0.951
SapurV1A.0173s0020 Salix purpurea SapurV1A.0173s0020 I 0.961
SapurV1A.0453s0210 Salix purpurea SapurV1A.0453s0210 I 0.953
Thhalv10014495m.g Eutrema salsugineum Thhalv10014495m.g I 0.901
Thhalv10017152m.g Eutrema salsugineum Thhalv10017152m.g I 0.912
PK12461.1 Cannabis sativa PK12461.1 I 0.937
NAC041 Arabidopsis thaliana AT2G33480 I 0.914
Pm007070 Prunus mume Pm007070 I 0.958
Bo2g011120 Brassica oleracea Bo2g011120 I 0.908
Bo3g009040 Brassica oleracea Bo3g009040 I 0.907
Bo4g043670 Brassica oleracea Bo4g043670 I 0.895
Bo4g181990 Brassica oleracea Bo4g181990 I 0.893
Bo9g168950 Brassica oleracea Bo9g168950 I 0.902
Bra005492 Brassica rapa Bra005492 I 0.895
Bra006186 Brassica rapa Bra006186 I 0.896
Bra008849 Brassica rapa Bra008849 I 0.908
Bra021856 Brassica rapa Bra021856 I 0.893
Bra023395 Brassica rapa Bra023395 I 0.899
ANAC041 Arabidopsis lyrata fgenesh2_kg.4__1354__AT2G33480.1 I 0.914
GLYMA08G47520 Glycine max GLYMA08G47520 I 0.948
GLYMA18G53954 Glycine max GLYMA18G53954 I 0.949
30128.m009035 Ricinus communis 30128.m009035 I 0.949
Cla001517 Citrullus lanatus Cla001517 I 0.956
ANAC083 Vitis vinifera VIT_01s0146g00280 I 0.947
POPTR_0001s13380 Populus trichocarpa POPTR_0001s13380 I 0.960
PRUPE_ppa010222mg Prunus persica PRUPE_ppa010222mg I 0.958
ANAC083 Arabidopsis lyrata scaffold_601328.1 I 0.931
MTR_7g005280 Medicago truncatula MTR_7g005280 I 0.924
TCM_008477 Theobroma cacao TCM_008477 I 0.944
TCM_014713 Theobroma cacao TCM_014713 I 0.895
Cagra.0301s0034 Capsella grandiflora Cagra.0301s0034 N 0.889
cassava37235.valid.m1 Manihot esculenta cassava37235.valid.m1 N 0.887
SapurV1A.1562s0040 Salix purpurea SapurV1A.1562s0040 N 0.871
SapurV1A.1562s0030 Salix purpurea SapurV1A.1562s0030 N 0.871
Solyc01g009860.2 Solanum lycopersicum Solyc01g009860.2 N 0.888
Carubv10023833m.g Capsella rubella Carubv10023833m.g N 0.889
PGSC0003DMG400011891 Solanum tuberosum PGSC0003DMG400011891 N 0.888
GSMUA_Achr10G11910_001 Musa acuminata GSMUA_Achr10G11910_001 N 0.893
gene06460-v1.0-hybrid Fragaria vesca gene06460-v1.0-hybrid N 0.880
GSMUA_Achr6G16560_001 Musa acuminata GSMUA_Achr6G16560_001 N 0.890