ENSSHAG00000005531 (Sarcophilus harrisii)
Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00292 (PAX) IPR001523 ENSSHAG00000005531 T311810_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PAX9
M03444_2.00 		Homo sapiens
NKCANTSAWGCGTGACS
SGTCACGCWTSANTGMN		 SELEX
Jolma et al.(2013)
PAX9_1 		1.000 1.000
PAX9
M05689_2.00 		Homo sapiens
BHRNYSRDSCGTRACSN
NSGTYACGSHYSRNYDV		 SELEX
Yin et al.(2017)
PAX9_eDBD_HT-SELEX 		1.000 1.000
PAX9
M05690_2.00 		Homo sapiens
BCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGV		 SELEX
Yin et al.(2017)
PAX9_eDBD_Methyl-HT-SELEX 		1.000 1.000
pax9
M11204_2.00 		Danio rerio Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX9_B 		0.976 0.976
PAX1
M03442_2.00 		Homo sapiens
DBCANTSAWGCGTGACS
SGTCACGCWTSANTGVH		 SELEX
Jolma et al.(2013)
PAX1_1 		0.960 0.960
PAX1
M05687_2.00 		Homo sapiens
BCRNTSRWGCGTGACSN
NSGTCACGCWYSANYGV		 SELEX
Yin et al.(2017)
PAX1_eDBD_HT-SELEX 		0.960 0.960
PAX1
M11207_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX1_B 		0.960 0.960
PAX1
M05688_2.00 		Homo sapiens
BCRNTSAWGCGTGACSN
NSGTCACGCWTSANYGV		 SELEX
Yin et al.(2017)
PAX1_eDBD_Methyl-HT-SELEX 		0.960 0.960
Poxm
M03944_2.00 		Drosophila melanogaster
CAVTCAWGCGTGACR
YGTCACGCWTGABTG		 SELEX
Nitta et al.(2015)
Poxm_1 		0.880 0.880
Poxm
M03945_2.00 		Drosophila melanogaster
NYSAWGCRTRACS
SGTYAYGCWTSRN		 SELEX
Nitta et al.(2015)
Poxm_2 		0.880 0.880
Poxm
M06436_2.00 		Drosophila melanogaster
NNNNNNMVNHNRNSCRTGA
TCAYGSNYNDNBKNNNNNN		 B1H
Zhu et al.(2011)
Poxm_SOLEXA_5_FBgn0003129 		0.880 0.880
PAX7
M00346_2.00 		Homo sapiens
NGTYAYGSHN
NDSCRTRACN		 PBM
Barrera et al.(2016)
PAX7_REF 		0.752 0.752
PAX7
M00345_2.00 		Homo sapiens
NSGTCACGSN
NSCGTGACSN		 PBM
Barrera et al.(2016)
PAX7_P112L 		0.744 0.744
pax2b
M02425_2.00 		Danio rerio
HVNYSRNSCR
YGSNYSRNBD		 PBM
Weirauch et al.(2014)
pTH8679 		0.736 0.736
Pax5B
M01301_2.00 		Gallus gallus
NSNDTNNNN
NNNNAHNSN		 PBM
Lambert et al.(2019)
pTH9781 		0.736 0.736
pax2
M02428_2.00 		Xenopus tropicalis
NNNRNBCRNN
NNYGVNYNNN		 PBM
Weirauch et al.(2014)
pTH8556 		0.736 0.736
PAX5
M03443_2.00 		Homo sapiens
RNBYANYSAWSCGTRACN
NGTYACGSWTSRNTRVNY		 SELEX
Jolma et al.(2013)
PAX5_1 		0.736 0.736
PAX5
M08160_2.00 		Homo sapiens
RDGCGTGACCNN
NNGGTCACGCHY		 ChIP-seq
Mathelier et al.(2014)
MA0014.3 		0.736 0.736
PAX5
M07995_2.00 		Homo sapiens
BCAVYSRDSCRKRRC
GYYMYGSHYSRBTGV		 ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5C20_HudsonAlpha 		0.736 0.736
PAX5
M07996_2.00 		Homo sapiens
BCASYSRDSCRTRAC
GTYAYGSHYSRSTGV		 ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5N19_HudsonAlpha 		0.736 0.736
PAX5
M07997_2.00 		Homo sapiens
CASYSRDSCRKRACN
NGTYMYGSHYSRSTG		 ChIP-seq
Gerstein et al.(2012)
GM12891_PAX5C20_HudsonAlpha 		0.736 0.736
PAX5
M07998_2.00 		Homo sapiens
BCASYSRDSCGKRRC
GYYMCGSHYSRSTGV		 ChIP-seq
Gerstein et al.(2012)
GM12892_PAX5C20_HudsonAlpha 		0.736 0.736
PAX5
M08227_2.00 		Homo sapiens
BCANYSRDGCGTRAM
KTYACGCHYSRNTGV		 ChIP-seq
Contrino et al.(2012)
Mv108 		0.736 0.736
PAX5
M08228_2.00 		Homo sapiens
AGCGTGRCYG
CRGYCACGCT		 ChIP-seq
Contrino et al.(2012)
Mv109 		0.736 0.736
PAX5
M09341_2.00 		Homo sapiens
SNVDGNKCARCVRAGCRDGAC
GTCHYGCTYBGYTGMNCHBNS		 Misc
Kulakovskiy et al.(2013)
PAX5_HUMAN.H11MO.0.A 		0.736 0.736
Pax5
M09342_2.00 		Mus musculus
VDRNBCAVYVRDSCRKRRM
KYYMYGSHYBRBTGVNYHB		 Misc
Kulakovskiy et al.(2013)
PAX5_MOUSE.H11MO.0.A 		0.736 0.736
PAX5
M09622_2.00 		Homo sapiens
BCASYSRDSCRTGRMN
NKYCAYGSHYSRSTGV		 Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_1 		0.736 0.736
PAX5
M09623_2.00 		Homo sapiens
BCABNVRSCGTGAC
GTCACGSYBNVTGV		 Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_2 		0.736 0.736
PAX5
M11208_2.00 		Homo sapiens
BCNNNRNKCANBGNWGNRKRGMSRSHNB
VNDSYSKCYMYNCWNCVNTGMNYNNNGV		 Transfac
Matys et al.(2006)
V$PAX5_01 		0.736 0.736
PAX5
M11209_2.00 		Homo sapiens
VRHVDGDNDBBTNRAGCGKRACVRYNVH
DBNRYBGTYMCGCTYNAVVHNHCHBDYB		 Transfac
Matys et al.(2006)
V$PAX5_02 		0.736 0.736
PAX5
M11210_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_06 		0.736 0.736
PAX5
M11211_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_07 		0.736 0.736
PAX5
M11212_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_Q6 		0.736 0.736
PAX8
M05685_2.00 		Homo sapiens
NRNBYRNYSRWGCGTGACSN
NSGTCACGCWYSRNYRVNYN		 SELEX
Yin et al.(2017)
PAX8_FL_HT-SELEX 		0.720 0.720
Pax8
M09624_2.00 		Rattus norvegicus
BCAGBCADSCRKGVM
KBCMYGSHTGVCTGV		 Misc
Heinz et al.(2010)
Thyroid-Pax8_GSE26938 		0.720 0.720
PAX8
M11205_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX8_01 		0.720 0.720
PAX8
M11206_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX8_B 		0.720 0.720
PAX8
M05686_2.00 		Homo sapiens
NRNBCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGVNYN		 SELEX
Yin et al.(2017)
PAX8_FL_Methyl-HT-SELEX 		0.720 0.720
sv
M01302_2.00 		Drosophila melanogaster
NNNSCRBRDM
KHYVYGSNNN		 PBM
Lambert et al.(2019)
pTH9773 		0.712 0.712
sv
M03949_2.00 		Drosophila melanogaster
NBCRNYSAWGCGTGACS
SGTCACGCWTSRNYGVN		 SELEX
Nitta et al.(2015)
sv_1 		0.712 0.712
sv
M06438_2.00 		Drosophila melanogaster
RNYSRDSCGTRACNN
NNGTYACGSHYSRNY		 B1H
Zhu et al.(2011)
sv_SOLEXA_5_FBgn0005561 		0.712 0.712
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSSHAP00000006354 Paired box 4 128

Links

Other Paired box family TFs
Other Sarcophilus harrisii TFs

518 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
WRKY63 Arabidopsis thaliana AT1G66600 D
Pm003013 Prunus mume Pm003013 I
Bostr.26959s0261 Boechera stricta Bostr.26959s0261 I
Bostr.26959s0259 Boechera stricta Bostr.26959s0259 I
mgf009193m Mimulus guttatus mgf009193m I
mgf002542m Mimulus guttatus mgf002542m I
Cucsa.177060 Cucumis sativus Cucsa.177060 I
cassava36286.valid.m1 Manihot esculenta cassava36286.valid.m1 I
cassava25180.valid.m1 Manihot esculenta cassava25180.valid.m1 I
Pm003015 Prunus mume Pm003015 I
Cagra.0255s0014 Capsella grandiflora Cagra.0255s0014 I
Cla018337 Citrullus lanatus Cla018337 I
VIT_08s0058g01390 Vitis vinifera VIT_08s0058g01390 I
Traes_3DL_48F7A19D2 Triticum aestivum Traes_3DL_48F7A19D2 I
TRAES3BF081400030CFD_g Triticum aestivum TRAES3BF081400030CFD_g I
Traes_3AL_2297D6E18 Triticum aestivum Traes_3AL_2297D6E18 I
AC205562.3_FG002 Zea mays AC205562.3_FG002 I
Bostr.26959s0262 Boechera stricta Bostr.26959s0262 I
TCM_019689 Theobroma cacao TCM_019689 I
Cagra.15225s0001 Capsella grandiflora Cagra.15225s0001 I
Carubv10012720m.g Capsella rubella Carubv10012720m.g I
Carubv10021420m.g Capsella rubella Carubv10021420m.g I
Carubv10021860m.g Capsella rubella Carubv10021860m.g I
Carubv10022120m.g Capsella rubella Carubv10022120m.g I
Ciclev10012055m.g Citrus clementina Ciclev10012055m.g I
MDP0000175240 Malus domestica MDP0000175240 I
orange1.1g020291m.g Citrus sinensis orange1.1g020291m.g I
Pavir.Eb03559 Panicum virgatum Pavir.Eb03559 I
Pavir.J31756 Panicum virgatum Pavir.J31756 I
SapurV1A.0356s0010 Salix purpurea SapurV1A.0356s0010 I
SapurV1A.0914s0120 Salix purpurea SapurV1A.0914s0120 I
Thhalv10000686m.g Eutrema salsugineum Thhalv10000686m.g I
PK03324.1 Cannabis sativa PK03324.1 I
GSMUA_Achr7G22020_001 Musa acuminata GSMUA_Achr7G22020_001 I
Al_scaffold_0002_1233 Arabidopsis lyrata Al_scaffold_0002_1233 I
WRKY67 Arabidopsis thaliana AT1G66550 I
WRKY64 Arabidopsis thaliana AT1G66560 I
WRKY66 Arabidopsis thaliana AT1G80590 I
BGIOSGA004703 Oryza indica BGIOSGA004703 I
Bo2g095820 Brassica oleracea Bo2g095820 I
Bra008459 Brassica rapa Bra008459 I
BRADI1G63220 Brachypodium distachyon BRADI1G63220 I
BRADI2G53495 Brachypodium distachyon BRADI2G53495 I
F775_23182 Aegilops tauschii F775_23182 I
WRKY67 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2000969 I
GRMZM2G065290 Zea mays GRMZM2G065290 I
GRMZM2G382350 Zea mays GRMZM2G382350 I
Si012735m.g Setaria italica Si012735m.g I
OB01G44140 Oryza brachyantha OB01G44140 I
ONIVA01G40340 Oryza nivara ONIVA01G40340 I
Si004791m.g Setaria italica Si004791m.g I
Sb07g019400 Sorghum bicolor Sb07g019400 I
Sb03g038180 Sorghum bicolor Sb03g038180 I
PRUPE_ppa026704mg Prunus persica PRUPE_ppa026704mg I
PRUPE_ppa025912mg Prunus persica PRUPE_ppa025912mg I
POPTR_0016s14490 Populus trichocarpa POPTR_0016s14490 I
POPTR_0006s10950 Populus trichocarpa POPTR_0006s10950 I
PGSC0003DMG400027582 Solanum tuberosum PGSC0003DMG400027582 I
OS01G0820700 Oryza sativa OS01G0820700 I
ORUFI01G38660 Oryza rufipogon ORUFI01G38660 I
ORGLA01G0291800 Oryza glaberrima ORGLA01G0291800 I
OMERI01G32480 Oryza meridionalis OMERI01G32480 I
BRADI4G44370 Brachypodium distachyon BRADI4G44370 N
Pavir.Ga01476 Panicum virgatum Pavir.Ga01476 N
Pavir.J37617 Panicum virgatum Pavir.J37617 N
Pavir.J38024 Panicum virgatum Pavir.J38024 N
OPUNC01G34270 Oryza punctata OPUNC01G34270 N
Si005138m.g Setaria italica Si005138m.g N