BGLB008429 (Biomphalaria glabrata)
Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00292 (PAX) IPR001523 BGLB008429 T312448_2.00 Vectorbase (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PAX1
M03442_2.00 		Homo sapiens
DBCANTSAWGCGTGACS
SGTCACGCWTSANTGVH		 SELEX
Jolma et al.(2013)
PAX1_1 		0.911 0.911
PAX9
M03444_2.00 		Homo sapiens
NKCANTSAWGCGTGACS
SGTCACGCWTSANTGMN		 SELEX
Jolma et al.(2013)
PAX9_1 		0.911 0.911
PAX1
M05687_2.00 		Homo sapiens
BCRNTSRWGCGTGACSN
NSGTCACGCWYSANYGV		 SELEX
Yin et al.(2017)
PAX1_eDBD_HT-SELEX 		0.911 0.911
PAX9
M05689_2.00 		Homo sapiens
BHRNYSRDSCGTRACSN
NSGTYACGSHYSRNYDV		 SELEX
Yin et al.(2017)
PAX9_eDBD_HT-SELEX 		0.911 0.911
PAX1
M11207_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX1_B 		0.911 0.911
PAX1
M05688_2.00 		Homo sapiens
BCRNTSAWGCGTGACSN
NSGTCACGCWTSANYGV		 SELEX
Yin et al.(2017)
PAX1_eDBD_Methyl-HT-SELEX 		0.911 0.911
PAX9
M05690_2.00 		Homo sapiens
BCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGV		 SELEX
Yin et al.(2017)
PAX9_eDBD_Methyl-HT-SELEX 		0.911 0.911
pax9
M11204_2.00 		Danio rerio Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX9_B 		0.902 0.902
Poxm
M03944_2.00 		Drosophila melanogaster
CAVTCAWGCGTGACR
YGTCACGCWTGABTG		 SELEX
Nitta et al.(2015)
Poxm_1 		0.821 0.821
Poxm
M03945_2.00 		Drosophila melanogaster
NYSAWGCRTRACS
SGTYAYGCWTSRN		 SELEX
Nitta et al.(2015)
Poxm_2 		0.821 0.821
Poxm
M06436_2.00 		Drosophila melanogaster
NNNNNNMVNHNRNSCRTGA
TCAYGSNYNDNBKNNNNNN		 B1H
Zhu et al.(2011)
Poxm_SOLEXA_5_FBgn0003129 		0.821 0.821
PAX7
M00346_2.00 		Homo sapiens
NGTYAYGSHN
NDSCRTRACN		 PBM
Barrera et al.(2016)
PAX7_REF 		0.715 0.715
pax2b
M02425_2.00 		Danio rerio
HVNYSRNSCR
YGSNYSRNBD		 PBM
Weirauch et al.(2014)
pTH8679 		0.715 0.715
Pax5B
M01301_2.00 		Gallus gallus
NSNDTNNNN
NNNNAHNSN		 PBM
Lambert et al.(2019)
pTH9781 		0.715 0.715
pax2
M02428_2.00 		Xenopus tropicalis
NNNRNBCRNN
NNYGVNYNNN		 PBM
Weirauch et al.(2014)
pTH8556 		0.715 0.715
PAX5
M03443_2.00 		Homo sapiens
RNBYANYSAWSCGTRACN
NGTYACGSWTSRNTRVNY		 SELEX
Jolma et al.(2013)
PAX5_1 		0.715 0.715
PAX5
M08160_2.00 		Homo sapiens
RDGCGTGACCNN
NNGGTCACGCHY		 ChIP-seq
Mathelier et al.(2014)
MA0014.3 		0.715 0.715
PAX5
M07995_2.00 		Homo sapiens
BCAVYSRDSCRKRRC
GYYMYGSHYSRBTGV		 ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5C20_HudsonAlpha 		0.715 0.715
PAX5
M07996_2.00 		Homo sapiens
BCASYSRDSCRTRAC
GTYAYGSHYSRSTGV		 ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5N19_HudsonAlpha 		0.715 0.715
PAX5
M07997_2.00 		Homo sapiens
CASYSRDSCRKRACN
NGTYMYGSHYSRSTG		 ChIP-seq
Gerstein et al.(2012)
GM12891_PAX5C20_HudsonAlpha 		0.715 0.715
PAX5
M07998_2.00 		Homo sapiens
BCASYSRDSCGKRRC
GYYMCGSHYSRSTGV		 ChIP-seq
Gerstein et al.(2012)
GM12892_PAX5C20_HudsonAlpha 		0.715 0.715
PAX5
M08227_2.00 		Homo sapiens
BCANYSRDGCGTRAM
KTYACGCHYSRNTGV		 ChIP-seq
Contrino et al.(2012)
Mv108 		0.715 0.715
PAX5
M08228_2.00 		Homo sapiens
AGCGTGRCYG
CRGYCACGCT		 ChIP-seq
Contrino et al.(2012)
Mv109 		0.715 0.715
PAX5
M09341_2.00 		Homo sapiens
SNVDGNKCARCVRAGCRDGAC
GTCHYGCTYBGYTGMNCHBNS		 Misc
Kulakovskiy et al.(2013)
PAX5_HUMAN.H11MO.0.A 		0.715 0.715
Pax5
M09342_2.00 		Mus musculus
VDRNBCAVYVRDSCRKRRM
KYYMYGSHYBRBTGVNYHB		 Misc
Kulakovskiy et al.(2013)
PAX5_MOUSE.H11MO.0.A 		0.715 0.715
PAX5
M09622_2.00 		Homo sapiens
BCASYSRDSCRTGRMN
NKYCAYGSHYSRSTGV		 Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_1 		0.715 0.715
PAX5
M09623_2.00 		Homo sapiens
BCABNVRSCGTGAC
GTCACGSYBNVTGV		 Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_2 		0.715 0.715
PAX5
M11208_2.00 		Homo sapiens
BCNNNRNKCANBGNWGNRKRGMSRSHNB
VNDSYSKCYMYNCWNCVNTGMNYNNNGV		 Transfac
Matys et al.(2006)
V$PAX5_01 		0.715 0.715
PAX5
M11209_2.00 		Homo sapiens
VRHVDGDNDBBTNRAGCGKRACVRYNVH
DBNRYBGTYMCGCTYNAVVHNHCHBDYB		 Transfac
Matys et al.(2006)
V$PAX5_02 		0.715 0.715
PAX5
M11210_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_06 		0.715 0.715
PAX5
M11211_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_07 		0.715 0.715
PAX5
M11212_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_Q6 		0.715 0.715
PAX8
M05685_2.00 		Homo sapiens
NRNBYRNYSRWGCGTGACSN
NSGTCACGCWYSRNYRVNYN		 SELEX
Yin et al.(2017)
PAX8_FL_HT-SELEX 		0.707 0.707
Pax8
M09624_2.00 		Rattus norvegicus
BCAGBCADSCRKGVM
KBCMYGSHTGVCTGV		 Misc
Heinz et al.(2010)
Thyroid-Pax8_GSE26938 		0.707 0.707
PAX8
M11205_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX8_01 		0.707 0.707
PAX8
M11206_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX8_B 		0.707 0.707
PAX7
M00345_2.00 		Homo sapiens
NSGTCACGSN
NSCGTGACSN		 PBM
Barrera et al.(2016)
PAX7_P112L 		0.707 0.707
PAX8
M05686_2.00 		Homo sapiens
NRNBCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGVNYN		 SELEX
Yin et al.(2017)
PAX8_FL_Methyl-HT-SELEX 		0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BGLB008429-PA Paired box 61 183

Links

Other Paired box family TFs
Other Biomphalaria glabrata TFs

404 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ETC1 Arabidopsis lyrata Al_scaffold_0001_92 N 0.000
AMTR_s00147p00088570 Amborella trichopoda AMTR_s00147p00088570 N 0.000
ETC1 Arabidopsis thaliana AT1G01380 N 0.000
TCL1 Arabidopsis thaliana AT2G30432 N 0.000
ETC3 Arabidopsis thaliana AT4G01060 N 0.000
TRY Arabidopsis thaliana AT5G53200 N 0.000
Bo2g046050 Brassica oleracea Bo2g046050 N 0.000
Bo2g098940 Brassica oleracea Bo2g098940 N 0.000
Bo3g022870 Brassica oleracea Bo3g022870 N 0.000
Bo3g024610 Brassica oleracea Bo3g024610 N 0.000
Bo3g054440 Brassica oleracea Bo3g054440 N 0.000
Bo8g117860 Brassica oleracea Bo8g117860 N 0.000
Bo9g003750 Brassica oleracea Bo9g003750 N 0.000
Bo9g110930 Brassica oleracea Bo9g110930 N 0.000
Bra000941 Brassica rapa Bra000941 N 0.000
Bra008539 Brassica rapa Bra008539 N 0.000
Bra026297 Brassica rapa Bra026297 N 0.000
Bra032635 Brassica rapa Bra032635 N 0.000
Bra037388 Brassica rapa Bra037388 N 0.000
TRY Arabidopsis lyrata fgenesh1_pg.C_scaffold_8001350 N 0.000
ETC3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002892 N 0.000
TCL1 Arabidopsis lyrata fgenesh2_kg.4__1015__AT2G30432.1 N 0.000
GLYMA01G43435 Glycine max GLYMA01G43435 N 0.000
GLYMA06G45941 Glycine max GLYMA06G45941 N 0.000
GLYMA11G02061 Glycine max GLYMA11G02061 N 0.000
GLYMA12G10790 Glycine max GLYMA12G10790 N 0.000
GLYMA12G32130 Glycine max GLYMA12G32130 N 0.000
GSMUA_Achr10G09220_001 Musa acuminata GSMUA_Achr10G09220_001 N 0.000
GSMUA_Achr8G19880_001 Musa acuminata GSMUA_Achr8G19880_001 N 0.000
GSMUA_AchrUn_randomG19730_001 Musa acuminata GSMUA_AchrUn_randomG19730_001 N 0.000
MTR_4g046737 Medicago truncatula MTR_4g046737 N 0.000
MTR_5g009460 Medicago truncatula MTR_5g009460 N 0.000
PGSC0003DMG400000212 Solanum tuberosum PGSC0003DMG400000212 N 0.000
POPTR_0002s17030 Populus trichocarpa POPTR_0002s17030 N 0.000
POPTR_0004s02060 Populus trichocarpa POPTR_0004s02060 N 0.000
POPTR_0007s02510 Populus trichocarpa POPTR_0007s02510 N 0.000
POPTR_0011s00390 Populus trichocarpa POPTR_0011s00390 N 0.000
POPTR_0012s01420 Populus trichocarpa POPTR_0012s01420 N 0.000
POPTR_0014s09200 Populus trichocarpa POPTR_0014s09200 N 0.000
POPTR_0015s02310 Populus trichocarpa POPTR_0015s02310 N 0.000
POPTR_0017s06470 Populus trichocarpa POPTR_0017s06470 N 0.000
PRUPE_ppa014728mg Prunus persica PRUPE_ppa014728mg N 0.000
PRUPE_ppa023853mg Prunus persica PRUPE_ppa023853mg N 0.000
PRUPE_ppa023926mg Prunus persica PRUPE_ppa023926mg N 0.000
PRUPE_ppa024794mg Prunus persica PRUPE_ppa024794mg N 0.000
Solyc01g095640.1 Solanum lycopersicum Solyc01g095640.1 N 0.000
TCM_005177 Theobroma cacao TCM_005177 N 0.000
TCM_011327 Theobroma cacao TCM_011327 N 0.000
TCM_015351 Theobroma cacao TCM_015351 N 0.000
TCM_016428 Theobroma cacao TCM_016428 N 0.000
TCM_030163 Theobroma cacao TCM_030163 N 0.000
TCM_046858 Theobroma cacao TCM_046858 N 0.000
VIT_12s0059g02360 Vitis vinifera VIT_12s0059g02360 N 0.000
VIT_15s0046g01130 Vitis vinifera VIT_15s0046g01130 N 0.000
VIT_16s0050g02530 Vitis vinifera VIT_16s0050g02530 N 0.000
Ca_15029 Cicer arietinum Ca_15029 N 0.000
Pm009748 Prunus mume Pm009748 N 0.000
Pm018400 Prunus mume Pm018400 N 0.000
Pm019781 Prunus mume Pm019781 N 0.000
29742.m001447 Ricinus communis 29742.m001447 N 0.000
29842.m003592 Ricinus communis 29842.m003592 N 0.000
29842.m003644 Ricinus communis 29842.m003644 N 0.000
30086.m000210 Ricinus communis 30086.m000210 N 0.000
cassava10382.m1 Manihot esculenta cassava10382.m1 N 0.000
cassava11157.m1 Manihot esculenta cassava11157.m1 N 0.000
cassava24285.valid.m1 Manihot esculenta cassava24285.valid.m1 N 0.000
cassava24286.valid.m1 Manihot esculenta cassava24286.valid.m1 N 0.000
cassava32987.m1 Manihot esculenta cassava32987.m1 N 0.000
cassava46504.m1 Manihot esculenta cassava46504.m1 N 0.000
Cucsa.201970 Cucumis sativus Cucsa.201970 N 0.000
mgf009009m Mimulus guttatus mgf009009m N 0.000
Aquca_012_00145 Aquilegia coerulea Aquca_012_00145 N 0.000
Aquca_028_00182 Aquilegia coerulea Aquca_028_00182 N 0.000
Aquca_037_00095 Aquilegia coerulea Aquca_037_00095 N 0.000
Bostr.26833s0960 Boechera stricta Bostr.26833s0960 N 0.000
Bostr.5325s0057 Boechera stricta Bostr.5325s0057 N 0.000
Bostr.7365s0058 Boechera stricta Bostr.7365s0058 N 0.000
Cagra.0084s0067 Capsella grandiflora Cagra.0084s0067 N 0.000
Cagra.1372s0017 Capsella grandiflora Cagra.1372s0017 N 0.000
Cagra.1968s0081 Capsella grandiflora Cagra.1968s0081 N 0.000
Carubv10003403m.g Capsella rubella Carubv10003403m.g N 0.000
Carubv10011382m.g Capsella rubella Carubv10011382m.g N 0.000
Carubv10024393m.g Capsella rubella Carubv10024393m.g N 0.000
Carubv10024964m.g Capsella rubella Carubv10024964m.g N 0.000
Carubv10027412m.g Capsella rubella Carubv10027412m.g N 0.000
Ciclev10006315m.g Citrus clementina Ciclev10006315m.g N 0.000
Ciclev10024111m.g Citrus clementina Ciclev10024111m.g N 0.000
Eucgr.A01720 Eucalyptus grandis Eucgr.A01720 N 0.000
Eucgr.D01323 Eucalyptus grandis Eucgr.D01323 N 0.000
Eucgr.D02360 Eucalyptus grandis Eucgr.D02360 N 0.000
Eucgr.E00069 Eucalyptus grandis Eucgr.E00069 N 0.000
Eucgr.E00851 Eucalyptus grandis Eucgr.E00851 N 0.000
Eucgr.K00332 Eucalyptus grandis Eucgr.K00332 N 0.000
evm.TU.contig_29502 Carica papaya evm.TU.contig_29502 N 0.000
evm.TU.supercontig_3.55 Carica papaya evm.TU.supercontig_3.55 N 0.000
gene19217-v1.0-hybrid Fragaria vesca gene19217-v1.0-hybrid N 0.000
gene23919-v1.0-hybrid Fragaria vesca gene23919-v1.0-hybrid N 0.000
gene35171-v1.0-hybrid Fragaria vesca gene35171-v1.0-hybrid N 0.000
Gorai.001G155700 Gossypium raimondii Gorai.001G155700 N 0.000
Gorai.002G083400 Gossypium raimondii Gorai.002G083400 N 0.000
Gorai.007G107400 Gossypium raimondii Gorai.007G107400 N 0.000
Gorai.010G253000 Gossypium raimondii Gorai.010G253000 N 0.000
Lus10005949.g Linum usitatissimum Lus10005949.g N 0.000
Lus10014933.g Linum usitatissimum Lus10014933.g N 0.000
Lus10038822.g Linum usitatissimum Lus10038822.g N 0.000
MDP0000141474 Malus domestica MDP0000141474 N 0.000
MDP0000216918 Malus domestica MDP0000216918 N 0.000
MDP0000270078 Malus domestica MDP0000270078 N 0.000
MDP0000387366 Malus domestica MDP0000387366 N 0.000
MDP0000499190 Malus domestica MDP0000499190 N 0.000
MDP0000583070 Malus domestica MDP0000583070 N 0.000
orange1.1g034546m.g Citrus sinensis orange1.1g034546m.g N 0.000
SapurV1A.0013s0580 Salix purpurea SapurV1A.0013s0580 N 0.000
SapurV1A.0190s0070 Salix purpurea SapurV1A.0190s0070 N 0.000
SapurV1A.0345s0340 Salix purpurea SapurV1A.0345s0340 N 0.000
SapurV1A.0346s0010 Salix purpurea SapurV1A.0346s0010 N 0.000
SapurV1A.0377s0050 Salix purpurea SapurV1A.0377s0050 N 0.000
SapurV1A.0722s0160 Salix purpurea SapurV1A.0722s0160 N 0.000
SapurV1A.0779s0100 Salix purpurea SapurV1A.0779s0100 N 0.000
SapurV1A.0928s0060 Salix purpurea SapurV1A.0928s0060 N 0.000
SapurV1A.1106s0040 Salix purpurea SapurV1A.1106s0040 N 0.000
SapurV1A.1227s0050 Salix purpurea SapurV1A.1227s0050 N 0.000
SapurV1A.2295s0020 Salix purpurea SapurV1A.2295s0020 N 0.000
SapurV1A.2893s0010 Salix purpurea SapurV1A.2893s0010 N 0.000
Thhalv10009233m.g Eutrema salsugineum Thhalv10009233m.g N 0.000
Thhalv10015741m.g Eutrema salsugineum Thhalv10015741m.g N 0.000
Thhalv10029104m.g Eutrema salsugineum Thhalv10029104m.g N 0.000
PK11198.1 Cannabis sativa PK11198.1 N 0.000