HPBE_0000827001 (Heligmosomoides bakeri)
Pipsqueak

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF05225 (HTH_psq) IPR007889 HPBE_0000827001 T315058_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
nasonia_NCBI_hmm1312624
M02436_2.00 		Nasonia vitripennis
NNNYNAAWNN
NNWTTNRNNN		 PBM
Weirauch et al.(2014)
pTH9266 		0.862 0.862
Eip93F
M06443_2.00 		Drosophila melanogaster
VCHSCCRAAAWT
AWTTTYGGSDGB		 B1H
Zhu et al.(2011)
Eip93F_SANGER_10_FBgn0013948 		0.862 0.862
Minc10479
M02439_2.00 		Meloidogyne incognita
NCCSAAWTTN
NAAWTTSGGN		 PBM
Weirauch et al.(2014)
pTH9213 		0.828 0.828
For this family, TFs with SR scores > 0.778 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
HPBE_0000827001-mRNA-1 Pipsqueak 1 30

Links

Other Pipsqueak family TFs
Other Heligmosomoides bakeri TFs

10 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nasonia_NCBI_hmm1312624 Nasonia vitripennis nasonia_NCBI_hmm1312624 D 0.862
Hsal_07289--NP_001011629.1_APIME Harpegnathos saltator Hsal_07289--NP_001011629.1_APIME I 0.862
ACAC_0000538501 Angiostrongylus cantonensis ACAC_0000538501 I 1.000
ANCDUO_12248 Ancylostoma duodenale ANCDUO_12248 I 0.966
ASIM_0001367501 Anisakis simplex ASIM_0001367501 I 0.897
DICVIV_12442 Dictyocaulus viviparus DICVIV_12442 I 0.966
NBR_0000704901 Nippostrongylus brasiliensis NBR_0000704901 I 1.000
nRc.2.0.1.g42873 Romanomermis culicivorax nRc.2.0.1.g42873 I 0.794
OESDEN_18004 Oesophagostomum dentatum OESDEN_18004 I 0.966
OESDEN_18130 Oesophagostomum dentatum OESDEN_18130 I 0.966