Minc10479 (Meloidogyne incognita)
Pipsqueak

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF05225 (HTH_psq) IPR007889 Minc10479 T314740_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Minc10479
M02439_2.00		 Meloidogyne incognita
NCCSAAWTTN
NAAWTTSGGN		 PBM
Weirauch et al.(2014)
pTH9213		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.778 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M02439_2.00 Pipsqueak 51 94

DNA Binding Domains

Protein ID Domain From To Sequence
Minc10479 Pipsqueak 119 162

Links

Other Pipsqueak family TFs
Other Meloidogyne incognita TFs

8 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ASIM_0001367501 Anisakis simplex ASIM_0001367501 I 0.862
nRc.2.0.1.g42873 Romanomermis culicivorax nRc.2.0.1.g42873 I 0.824
BTMF_0000266401 Brugia timori BTMF_0000266401 I 0.795
nAv.1.0.1.g08771 Acanthocheilonema viteae nAv.1.0.1.g08771 I 0.795
ANCDUO_12248 Ancylostoma duodenale ANCDUO_12248 I 0.791
DICVIV_12442 Dictyocaulus viviparus DICVIV_12442 I 0.791
OESDEN_18004 Oesophagostomum dentatum OESDEN_18004 I 0.791
OESDEN_18130 Oesophagostomum dentatum OESDEN_18130 I 0.791