nRc.2.0.1.g42873 (Romanomermis culicivorax)
Pipsqueak

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF05225 (HTH_psq) IPR007889 nRc.2.0.1.g42873 T315101_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
nasonia_NCBI_hmm1312624
M02436_2.00 		Nasonia vitripennis
NNNYNAAWNN
NNWTTNRNNN		 PBM
Weirauch et al.(2014)
pTH9266 		0.824 0.824
Minc10479
M02439_2.00 		Meloidogyne incognita
NCCSAAWTTN
NAAWTTSGGN		 PBM
Weirauch et al.(2014)
pTH9213 		0.824 0.824
Eip93F
M06443_2.00 		Drosophila melanogaster
VCHSCCRAAAWT
AWTTTYGGSDGB		 B1H
Zhu et al.(2011)
Eip93F_SANGER_10_FBgn0013948 		0.824 0.824
For this family, TFs with SR scores > 0.778 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
nRc.2.0.1.t42873-RA Pipsqueak 1 35

Links

Other Pipsqueak family TFs
Other Romanomermis culicivorax TFs

17 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANCDUO_12248 Ancylostoma duodenale ANCDUO_12248 I 0.941
DICVIV_12442 Dictyocaulus viviparus DICVIV_12442 I 0.941
OESDEN_18004 Oesophagostomum dentatum OESDEN_18004 I 0.941
OESDEN_18130 Oesophagostomum dentatum OESDEN_18130 I 0.941
BTMF_0000266401 Brugia timori BTMF_0000266401 I 0.882
nAv.1.0.1.g08771 Acanthocheilonema viteae nAv.1.0.1.g08771 I 0.882
GM26391 Drosophila sechellia FBgn0181244 I 0.824
GD20912 Drosophila simulans FBgn0192370 I 0.824
GE10258 Drosophila yakuba FBgn0228131 I 0.824
Eip93F Drosophila melanogaster FBgn0264490 D 0.824
nasonia_NCBI_hmm1312624 Nasonia vitripennis nasonia_NCBI_hmm1312624 D 0.824
Hsal_07289--NP_001011629.1_APIME Harpegnathos saltator Hsal_07289--NP_001011629.1_APIME I 0.824
Minc10479 Meloidogyne incognita Minc10479 D 0.824
AMEC013272 Anopheles melas AMEC013272 I 0.824
ACAC_0000538501 Angiostrongylus cantonensis ACAC_0000538501 I 0.794
HPBE_0000827001 Heligmosomoides bakeri HPBE_0000827001 I 0.794
NBR_0000704901 Nippostrongylus brasiliensis NBR_0000704901 I 0.794