SBAD_0001053101 (Soboliphyme baturini)
Pipsqueak

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF05225 (HTH_psq) IPR007889 SBAD_0001053101 T315117_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
SBAD_0001053101-mRNA-1 Pipsqueak 17 62
SBAD_0001053101-mRNA-1 Pipsqueak 235 280

Links

Other Pipsqueak family TFs
Other Soboliphyme baturini TFs

6 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ciclev10021850m.g Citrus clementina Ciclev10021850m.g N
Solyc09g020000.2 Solanum lycopersicum Solyc09g020000.2 N
TCM_002550 Theobroma cacao TCM_002550 N
Traes_2AL_6990211D0 Triticum aestivum Traes_2AL_6990211D0 N
Traes_2BL_7B5109B55 Triticum aestivum Traes_2BL_7B5109B55 N
Traes_2DL_B72450387 Triticum aestivum Traes_2DL_B72450387 N
Cla012999 Citrullus lanatus Cla012999 N
30005.m001261 Ricinus communis 30005.m001261 N
mgf025428m Mimulus guttatus mgf025428m N
Bostr.22252s0273 Boechera stricta Bostr.22252s0273 N
Cagra.0133s0101 Capsella grandiflora Cagra.0133s0101 N
Carubv10014434m.g Capsella rubella Carubv10014434m.g N
Ciclev10016354m.g Citrus clementina Ciclev10016354m.g N
Solyc08g013980.2 Solanum lycopersicum Solyc08g013980.2 N
Gorai.004G060500 Gossypium raimondii Gorai.004G060500 N
Gorai.007G162200 Gossypium raimondii Gorai.007G162200 N
Gorai.011G138900 Gossypium raimondii Gorai.011G138900 N
Gorai.N001000 Gossypium raimondii Gorai.N001000 N
Lus10025581.g Linum usitatissimum Lus10025581.g N
Lus10025582.g Linum usitatissimum Lus10025582.g N
Lus10027045.g Linum usitatissimum Lus10027045.g N
orange1.1g024388m.g Citrus sinensis orange1.1g024388m.g N
orange1.1g025458m.g Citrus sinensis orange1.1g025458m.g N
Pavir.Ga01503 Panicum virgatum Pavir.Ga01503 N
Thhalv10021333m.g Eutrema salsugineum Thhalv10021333m.g N
OBART04G17310 Oryza barthii OBART04G17310 N
BGIOSGA014805 Oryza indica BGIOSGA014805 N
Bo1g147290 Brassica oleracea Bo1g147290 N
Bo3g061340 Brassica oleracea Bo3g061340 N
Bra001258 Brassica rapa Bra001258 N
Bra029658 Brassica rapa Bra029658 N
Bra040015 Brassica rapa Bra040015 N
F775_32546 Aegilops tauschii F775_32546 N
fgenesh2_kg.3__781__AT3G07565.3 Arabidopsis lyrata fgenesh2_kg.3__781__AT3G07565.3 N
GRMZM2G053557 Zea mays GRMZM2G053557 N
GSMUA_Achr6G28720_001 Musa acuminata GSMUA_Achr6G28720_001 N
GSMUA_Achr9G08210_001 Musa acuminata GSMUA_Achr9G08210_001 N
LPERR04G13890 Leersia perrieri LPERR04G13890 N
AT3G07565 Arabidopsis thaliana AT3G07565 N
OGLUM04G17350 Oryza glumaepatula OGLUM04G17350 N
OLONG_009317 Oryza longistaminata OLONG_009317 N
OMERI04G14610 Oryza meridionalis OMERI04G14610 N
ONIVA04G15620 Oryza nivara ONIVA04G15620 N
OPUNC04G15120 Oryza punctata OPUNC04G15120 N
ORGLA04G0144300 Oryza glaberrima ORGLA04G0144300 N
ORUFI04G18740 Oryza rufipogon ORUFI04G18740 N
PGSC0003DMG400020996 Solanum tuberosum PGSC0003DMG400020996 N
POPTR_0014s17210 Populus trichocarpa POPTR_0014s17210 N
Sb06g021360 Sorghum bicolor Sb06g021360 N
Si010917m.g Setaria italica Si010917m.g N