TC006536 (Tribolium castaneum)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00853 (Runt) IPR013524 TC006536 T319629_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RUNX3
M03464_2.00 		Homo sapiens
HRACCGCAAACCRCAN
NTGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_1 		0.769 0.769
RUNX3
M03465_2.00 		Homo sapiens
WAACCRCARN
NYTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX3_2 		0.769 0.769
RUNX3
M03466_2.00 		Homo sapiens
HDACCRCADWAACCRCRN
NYGYGGTTWHTGYGGTHD		 SELEX
Jolma et al.(2013)
RUNX3_3 		0.769 0.769
RUNX3
M03467_2.00 		Homo sapiens
HRACCRCAAH
DTTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_4 		0.769 0.769
RUNX3
M02751_2.00 		Homo sapiens
WACCRCAM
KTGYGGTW		 SELEX
Jolma et al.(2010)
RUNX3_monomer 		0.769 0.769
lz
M03964_2.00 		Drosophila melanogaster
HRACCGCAAHM
KDTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_1 		0.769 0.769
lz
M03965_2.00 		Drosophila melanogaster
HVACCRCARWAACCRCAV
BTGYGGTTWYTGYGGTBD		 SELEX
Nitta et al.(2015)
lz_2 		0.769 0.769
lz
M03966_2.00 		Drosophila melanogaster
WRACCRCAWTAACCRCAA
TTGYGGTTAWTGYGGTYW		 SELEX
Nitta et al.(2015)
lz_3 		0.769 0.769
lz
M03967_2.00 		Drosophila melanogaster
HRACCGCAAAACCRCAR
YTGYGGTTTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_4 		0.769 0.769
RUNX3
M05731_2.00 		Homo sapiens
YWAACCGCAAAAACCGCARV
BYTGCGGTTTTTGCGGTTWR		 SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX 		0.769 0.769
RUNX3
M09369_2.00 		Homo sapiens
HAACCACARN
NYTGTGGTTD		 Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A 		0.769 0.769
Runx3
M09374_2.00 		Mus musculus
NHRACCACARVN
NBYTGTGGTYDN		 Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A 		0.769 0.769
RUNX3
M11252_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3_01 		0.769 0.769
RUNX3
M11253_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3 		0.769 0.769
RUNX3
M11254_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q4 		0.769 0.769
RUNX3
M05732_2.00 		Homo sapiens
HWAACCACRAAAACCACRARN
NYTYGTGGTTTTYGTGGTTWD		 SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX 		0.769 0.769
Runx2
M01307_2.00 		Mus musculus
NHDACCRCAN
NTGYGGTHDN		 PBM
Lambert et al.(2019)
pTH9764 		0.762 0.762
RUNX2
M03468_2.00 		Homo sapiens
HRACCGCAAACCRCRD
HYGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_1 		0.762 0.762
RUNX2
M03469_2.00 		Homo sapiens
HRACCRCADWWACCRCAD
HTGYGGTWWHTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_2 		0.762 0.762
RUNX2
M03470_2.00 		Homo sapiens
WAACCRCAR
YTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX2_3 		0.762 0.762
RUNX2
M05733_2.00 		Homo sapiens
NHRACCRCADWAACCRCAVN
NBTGYGGTTWHTGYGGTYDN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX 		0.762 0.762
Runx1
M08163_2.00 		Mus musculus
HRRCCACARVN
NBYTGTGGYYD		 ChIP-seq
Mathelier et al.(2014)
MA0002.2 		0.762 0.762
RUNX1
M09371_2.00 		Homo sapiens
NWAACCACARV
BYTGTGGTTWN		 Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A 		0.762 0.762
RUNX2
M09370_2.00 		Homo sapiens
MMHAACCACAVVMH
DKBBTGTGGTTDKK		 Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A 		0.762 0.762
Runx1
M09372_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A 		0.762 0.762
Runx2
M09373_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A 		0.762 0.762
RUNX1
M09632_2.00 		Homo sapiens
HAACCACADV
BHTGTGGTTD		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180 		0.762 0.762
RUNX1
M09631_2.00 		Homo sapiens
VCCACWTCCTBY
RVAGGAWGTGGB		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954 		0.762 0.762
RUNX2
M09630_2.00 		Homo sapiens
NHVACCACANNN
NNNTGTGGTBDN		 Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889 		0.762 0.762
Runx1
M09633_2.00 		Mus musculus
NWAACCACAR
YTGTGGTTWN		 Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178 		0.762 0.762
RUNX1
M11258_2.00 		Homo sapiens
ACCRCA
TGYGGT		 Transfac
Matys et al.(2006)
V$AML1_01 		0.762 0.762
RUNX1
M11259_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_01 		0.762 0.762
RUNX1
M11260_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_02 		0.762 0.762
RUNX1
M11261_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4 		0.762 0.762
RUNX1
M11262_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q5 		0.762 0.762
RUNX1
M11263_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q6 		0.762 0.762
RUNX2
M11255_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q3 		0.762 0.762
RUNX2
M11256_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q6 		0.762 0.762
RUNX2
M11257_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OSF2_Q6 		0.762 0.762
RUNX2
M05734_2.00 		Homo sapiens
NWAACCACRAAAACCACRRN
NYYGTGGTTTTYGTGGTTWN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX 		0.762 0.762
run
M06444_2.00 		Drosophila melanogaster
WAACCGCAR
YTGCGGTTW		 B1H
Zhu et al.(2011)
run_Bgb_NBT_FBgn0003300 		0.715 0.715
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
TC006536-PA Runt 69 198

Links

Other Runt family TFs
Other Tribolium castaneum TFs

408 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
irf5.L Xenopus laevis XB-GENE-998629 D
irf6.2 Xenopus tropicalis XB-GENE-5910331 D
IRF6 Gallus gallus ENSGALG00000001405 D
IRF6 Meleagris gallopavo ENSMGAG00000004431 D
Irf6 Mus musculus ENSMUSG00000026638 D
IRF5 Homo sapiens ENSG00000128604 D
IRF6 Homo sapiens ENSG00000117595 D
irf5 Takifugu rubripes ENSTRUG00000000641 I
IRF6 Ochotona princeps ENSOPRG00000014295 I
irf6 Tetraodon nigroviridis ENSTNIG00000014635 I
irf5 Tetraodon nigroviridis ENSTNIG00000003346 I
IRF6 Taeniopygia guttata ENSTGUG00000001485 I
ENSSTOG00000028204 Ictidomys tridecemlineatus ENSSTOG00000028204 I
IRF6 Sus scrofa ENSSSCG00000015612 I
ENSSHAG00000006683 Sarcophilus harrisii ENSSHAG00000006683 I
Irf6 Rattus norvegicus ENSRNOG00000005082 I
IRF6 Pteropus vampyrus ENSPVAG00000004865 I
IRF6 Pan troglodytes ENSPTRG00000001941 I
ENSPSIG00000003597 Pelodiscus sinensis ENSPSIG00000003597 I
ENSPPYG00000000253 Pongo abelii ENSPPYG00000000253 I
ENSPFOG00000014077 Poecilia formosa ENSPFOG00000014077 I
ENSPFOG00000013528 Poecilia formosa ENSPFOG00000013528 I
ENSPFOG00000005876 Poecilia formosa ENSPFOG00000005876 I
IRF6 Procavia capensis ENSPCAG00000006456 I
ENSPANG00000011328 Papio anubis ENSPANG00000011328 I
irf6 Oryzias latipes ENSORLG00000000511 I
IRF6 Otolemur garnettii ENSOGAG00000010708 I
Cmyd_10002838 Chelonia mydas Cmyd_10002838 I
irf5 Xenopus tropicalis XB-GENE-998624 I
irf6.S Xenopus laevis XB-GENE-876421 I
irf6 Xenopus tropicalis XB-GENE-876410 I
irf6.2.L Xenopus laevis XB-GENE-5910427 I
Pvit_15428 Pogona vitticeps Pvit_15428 I
Pvit_14327 Pogona vitticeps Pvit_14327 I
Ogr12956 Ophisaurus gracilis Ogr12956 I
Myotis_brandtii_IRF6_10012270 Myotis brandtii Myotis_brandtii_IRF6_10012270 I
ENSP00000355988 Macaca fascicularis ENSP00000355988 I
Cmyd_10010684 Chelonia mydas Cmyd_10010684 I
irf6 Takifugu rubripes ENSTRUG00000006951 I
Alligator_sinensis_CCG015719.1 Alligator sinensis Alligator_sinensis_CCG015719.1 I
Alligator_sinensis_CCG004564.1 Alligator sinensis Alligator_sinensis_CCG004564.1 I
Alligator_sinensis_CCG003696.1 Alligator sinensis Alligator_sinensis_CCG003696.1 I
Afo_R001981 Aptenodytes forsteri Afo_R001981 I
ENSXMAG00000013056 Xiphophorus maculatus ENSXMAG00000013056 I
ENSXMAG00000007143 Xiphophorus maculatus ENSXMAG00000007143 I
IRF6 Vicugna pacos ENSVPAG00000010247 I
IRF6 Tursiops truncatus ENSTTRG00000001121 I
ENSTSYG00000010982 Tarsius syrichta ENSTSYG00000010982 I
irf5 Danio rerio ENSDARG00000045681 I
ENSGMOG00000007264 Gadus morhua ENSGMOG00000007264 I
IRF6 Gorilla gorilla ENSGGOG00000006214 I
irf6 Gasterosteus aculeatus ENSGACG00000000990 I
irf5 Gasterosteus aculeatus ENSGACG00000000695 I
IRF6 Felis catus ENSFCAG00000015138 I
IRF6 Echinops telfairi ENSETEG00000008368 I
IRF6 Equus caballus ENSECAG00000007482 I
Irf6 Dipodomys ordii ENSDORG00000008891 I
IRF6 Dasypus novemcinctus ENSDNOG00000001694 I
irf6 Danio rerio ENSDARG00000101986 I
ENSGMOG00000007988 Gadus morhua ENSGMOG00000007988 I
ENSCSAG00000015263 Chlorocebus sabaeus ENSCSAG00000015263 I
IRF6 Cavia porcellus ENSCPOG00000023829 I
IRF6 Callithrix jacchus ENSCJAG00000015032 I
IRF6 Choloepus hoffmanni ENSCHOG00000010399 I
IRF6 Canis familiaris ENSCAFG00000011971 I
IRF6 Bos taurus ENSBTAG00000002849 I
ENSAPLG00000009319 Anas platyrhynchos ENSAPLG00000009319 I
ENSAMXG00000004616 Astyanax mexicanus ENSAMXG00000004616 I
ENSAMEG00000017984 Ailuropoda melanoleuca ENSAMEG00000017984 I
IRF6 Macaca mulatta ENSMMUG00000022065 I
ENSONIG00000007600 Oreochromis niloticus ENSONIG00000007600 I
IRF6 Anolis carolinensis ENSACAG00000005931 I
IRF6 Oryctolagus cuniculus ENSOCUG00000004035 I
ENSOARG00000020948 Ovis aries ENSOARG00000020948 I
ENSOARG00000012720 Ovis aries ENSOARG00000012720 I
IRF6 Ornithorhynchus anatinus ENSOANG00000013718 I
ENSNLEG00000001962 Nomascus leucogenys ENSNLEG00000001962 I
ENSMPUG00000003106 Mustela putorius furo ENSMPUG00000003106 I
IRF5 Monodelphis domestica ENSMODG00000014710 I
IRF6 Monodelphis domestica ENSMODG00000002539 I
ENSONIG00000018961 Oreochromis niloticus ENSONIG00000018961 I
IRF6 Myotis lucifugus ENSMLUG00000004509 I
IRF6 Microcebus murinus ENSMICG00000001233 I
ENSMEUG00000014941 Macropus eugenii ENSMEUG00000014941 I
ENSMEUG00000002435 Macropus eugenii ENSMEUG00000002435 I
ENSLOCG00000015563 Lepisosteus oculatus ENSLOCG00000015563 I
ENSLOCG00000011297 Lepisosteus oculatus ENSLOCG00000011297 I
IRF6 Loxodonta africana ENSLAFG00000001374 I
ENSLACG00000018600 Latimeria chalumnae ENSLACG00000018600 I
ENSLACG00000005750 Latimeria chalumnae ENSLACG00000005750 I