Pavir.Ab02992 (Panicum virgatum)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02042 (RWP-RK) IPR003035 Pavir.Ab02992 T321215_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RKD2
M07249_2.00 		Arabidopsis thaliana
NHGWCBNTTCRDCTTCYHN
NDRGAAGHYGAANVGWCDN		 Dap-seq
OMalley et al.(2016)
RKD2_col_a 		0.735 0.735
RKD2
M07250_2.00 		Arabidopsis thaliana
GWCBBTTCRDMTTCC
GGAAKHYGAAVVGWC		 Dap-seq
OMalley et al.(2016)
RKD2_colamp_a 		0.735 0.735
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ab02992.1.p RWP-RK 42 90

Links

Other RWP-RK family TFs
Other Panicum virgatum TFs

93 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
RKD2 Arabidopsis thaliana AT1G74480 D 0.735
Bostr.3288s0094 Boechera stricta Bostr.3288s0094 I 0.735
ORGLA06G0077700 Oryza glaberrima ORGLA06G0077700 I 0.857
ORUFI06G08510 Oryza rufipogon ORUFI06G08510 I 0.857
OS06G0228950 Oryza sativa OS06G0228950 I 0.857
Sb10g008120 Sorghum bicolor Sb10g008120 I 0.878
Si008273m.g Setaria italica Si008273m.g I 0.878
TCM_014009 Theobroma cacao TCM_014009 I 0.000
Traes_6BL_301505440 Triticum aestivum Traes_6BL_301505440 I 0.755
Traes_6DL_8ECBBC867 Triticum aestivum Traes_6DL_8ECBBC867 I 0.755
Traes_7DS_405F08A53 Triticum aestivum Traes_7DS_405F08A53 I 0.857
TRIUR3_19503 Triticum urartu TRIUR3_19503 I 0.898
mg020279m Mimulus guttatus mg020279m I 0.776
ORUFI02G34010 Oryza rufipogon ORUFI02G34010 I 0.837
Cagra.0402s0077 Capsella grandiflora Cagra.0402s0077 I 0.755
Cagra.4153s0001 Capsella grandiflora Cagra.4153s0001 I 0.000
Carubv10011133m.g Capsella rubella Carubv10011133m.g I 0.000
Carubv10021541m.g Capsella rubella Carubv10021541m.g I 0.755
MDP0000266172 Malus domestica MDP0000266172 I 0.755
Pavir.Aa00708 Panicum virgatum Pavir.Aa00708 I 0.959
Pavir.Da01160 Panicum virgatum Pavir.Da01160 I 0.878
Pavir.J13146 Panicum virgatum Pavir.J13146 I 0.878
Thhalv10019554m.g Eutrema salsugineum Thhalv10019554m.g I 0.735
PDK_20s1383532g001 Phoenix dactylifera PDK_20s1383532g001 I 0.776
MLOC_59560 Hordeum vulgare MLOC_59560 I 0.878
BGIOSGA005630 Oryza indica BGIOSGA005630 I 0.837
BGIOSGA022580 Oryza indica BGIOSGA022580 I 0.857
F775_00225 Aegilops tauschii F775_00225 I 0.755
F775_07483 Aegilops tauschii F775_07483 I 0.857
fgenesh1_pg.C_scaffold_2001738 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001738 I 0.755
GRMZM2G392306 Zea mays GRMZM2G392306 I 0.878
LPERR06G07570 Leersia perrieri LPERR06G07570 I 0.837
MLOC_12609 Hordeum vulgare MLOC_12609 I 0.892
ORGLA02G0278600 Oryza glaberrima ORGLA02G0278600 I 0.837
OB02G39310 Oryza brachyantha OB02G39310 I 0.857
OB06G17750 Oryza brachyantha OB06G17750 I 0.857
OBART02G32320 Oryza barthii OBART02G32320 I 0.837
OLONG_016325 Oryza longistaminata OLONG_016325 I 0.816
OMERI02G30990 Oryza meridionalis OMERI02G30990 I 0.857
OMERI06G09770 Oryza meridionalis OMERI06G09770 I 0.857
ONIVA06G04700 Oryza nivara ONIVA06G04700 I 0.837
ONIVA06G09450 Oryza nivara ONIVA06G09450 I 0.857
OPUNC02G29870 Oryza punctata OPUNC02G29870 I 0.837
OPUNC06G07940 Oryza punctata OPUNC06G07940 I 0.857
Si019159m.g Setaria italica Si019159m.g N 0.870
LPERR02G26470 Leersia perrieri LPERR02G26470 N 0.816
Sb04g028040 Sorghum bicolor Sb04g028040 N 0.878
BRADI3G59420 Brachypodium distachyon BRADI3G59420 N 0.000
BRADI3G59410 Brachypodium distachyon BRADI3G59410 N 0.776
BRADI1G45170 Brachypodium distachyon BRADI1G45170 N 0.796
Pavir.J17077 Panicum virgatum Pavir.J17077 N 0.821