ENSPSIG00000013495 (Pelodiscus sinensis)
SAND

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01342 (SAND) IPR000770 ENSPSIG00000013495 T321879_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Gmeb2
M00824_2.00 		Mus musculus
NNACGYNN
NNRCGTNN		 PBM
Weirauch et al.(2013)
pTH3084 		0.993 0.960
GMEB2
M03471_2.00 		Homo sapiens
YBACGYAM
KTRCGTVR		 SELEX
Jolma et al.(2013)
GMEB2_1 		0.993 0.960
GMEB2
M03472_2.00 		Homo sapiens
WACGTGSTYACGYW
WRCGTRASCACGTW		 SELEX
Jolma et al.(2013)
GMEB2_2 		0.993 0.960
GMEB2
M03473_2.00 		Homo sapiens
YACGTAACBBACGYA
TRCGTVVGTTACGTR		 SELEX
Jolma et al.(2013)
GMEB2_3 		0.993 0.960
GMEB2
M03474_2.00 		Homo sapiens
BKACGTAM
KTACGTMV		 SELEX
Jolma et al.(2013)
GMEB2_4 		0.993 0.960
GMEB2
M05735_2.00 		Homo sapiens
BYACGTAVSBTACGTRV
BYACGTAVSBTACGTRV		 SELEX
Yin et al.(2017)
GMEB2_eDBD_HT-SELEX 		0.993 0.960
GMEB2
M05736_2.00 		Homo sapiens
BBACGYAMVBNACGYVV
BBRCGTNVBKTRCGTVV		 SELEX
Yin et al.(2017)
GMEB2_eDBD_Methyl-HT-SELEX 		0.993 0.960
GMEB2
M02458_2.00 		Anolis carolinensis
NNACGYANN
NNTRCGTNN		 PBM
Weirauch et al.(2014)
pTH9219 		0.993 0.973
GMEB2
M02462_2.00 		Meleagris gallopavo
BBACGYH
DRCGTVV		 PBM
Weirauch et al.(2014)
pTH9211 		0.992 0.960
GMEB1
M02461_2.00 		Meleagris gallopavo
NNACGYNNN
NNNRCGTNN		 PBM
Weirauch et al.(2014)
pTH8318 		0.989 0.787
ENSMODG00000010947
M02463_2.00 		Monodelphis domestica
NNRCGYN
NRCGYNN		 PBM
Weirauch et al.(2014)
pTH8671 		0.989 0.787
GMEB1
M02460_2.00 		Homo sapiens
NNVCGYNNN
NNNRCGBNN		 PBM
Weirauch et al.(2014)
pTH9026 		0.989 0.773
Gmeb1
M00190_2.00 		Mus musculus
NNRCGYNNN
NNNRCGYNN		 PBM
Badis et al.(2009)
Gmeb1_1745 		0.989 0.773
GMEB1
M02465_2.00 		Pteropus vampyrus
NBACGYHN
NDRCGTVN		 PBM
Weirauch et al.(2014)
pTH9282 		0.989 0.773
GMEB1
M05737_2.00 		Homo sapiens
KKACGTAMNKTACGTAM
KTACGTAMNKTACGTMM		 SELEX
Yin et al.(2017)
GMEB1_FL_HT-SELEX 		0.989 0.773
GMEB1
M05738_2.00 		Homo sapiens
KNRCGTVRBBVCGYHN
NDRCGBVVYBACGYNM		 SELEX
Yin et al.(2017)
GMEB1_FL_Methyl-HT-SELEX 		0.989 0.773
gmeb1.S
M02469_2.00 		Xenopus laevis
NKACGTVY
RBACGTMN		 PBM
Weirauch et al.(2014)
pTH9298 		0.984 0.747
gmeb1
M02468_2.00 		Xenopus tropicalis
NNRCGYNNN
NNNRCGYNN		 PBM
Weirauch et al.(2014)
pTH8745 		0.984 0.733
ENSCING00000003435
M02459_2.00 		Ciona intestinalis
NKACGTMVNN
NNBKACGTMN		 PBM
Weirauch et al.(2014)
pTH9356 		0.963 0.653
For this family, TFs with SR scores > 0.843 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPSIP00000015072 SAND 87 162

Links

Other SAND family TFs
Other Pelodiscus sinensis TFs

139 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT1G49010 Arabidopsis thaliana AT1G49010 D 0.000
PK19621.1 Cannabis sativa PK19621.1 D 0.000
Gorai.006G063000 Gossypium raimondii Gorai.006G063000 I 0.000
Cucsa.198920 Cucumis sativus Cucsa.198920 I 0.000
Bostr.26675s0270 Boechera stricta Bostr.26675s0270 I 0.000
Cagra.1613s0002 Capsella grandiflora Cagra.1613s0002 I 0.000
Carubv10009808m.g Capsella rubella Carubv10009808m.g I 0.000
Ciclev10021342m.g Citrus clementina Ciclev10021342m.g I 0.000
Eucgr.K02659 Eucalyptus grandis Eucgr.K02659 I 0.000
gene26214-v1.0-hybrid Fragaria vesca gene26214-v1.0-hybrid I 0.000
Pm030197 Prunus mume Pm030197 I 0.000
MDP0000853568 Malus domestica MDP0000853568 I 0.000
SapurV1A.0234s0050 Salix purpurea SapurV1A.0234s0050 I 0.000
SapurV1A.0333s0040 Salix purpurea SapurV1A.0333s0040 I 0.000
SapurV1A.0583s0020 Salix purpurea SapurV1A.0583s0020 I 0.000
Thhalv10011650m.g Eutrema salsugineum Thhalv10011650m.g I 0.000
chr4.LjB15O07.50.nc Lotus japonicus chr4.LjB15O07.50.nc I 0.000
Cla019277 Citrullus lanatus Cla019277 I 0.000
Ca_06612 Cicer arietinum Ca_06612 I 0.000
VIT_17s0000g04130 Vitis vinifera VIT_17s0000g04130 I 0.000
TCM_012262 Theobroma cacao TCM_012262 I 0.000
Solyc03g119740.2 Solanum lycopersicum Solyc03g119740.2 I 0.000
scaffold_104540.1 Arabidopsis lyrata scaffold_104540.1 I 0.000
PRUPE_ppa009396mg Prunus persica PRUPE_ppa009396mg I 0.000
PRUPE_ppa009092mg Prunus persica PRUPE_ppa009092mg I 0.000
POPTR_0012s05720 Populus trichocarpa POPTR_0012s05720 I 0.000
MTR_4g111975 Medicago truncatula MTR_4g111975 I 0.000
GSMUA_Achr9G20620_001 Musa acuminata GSMUA_Achr9G20620_001 I 0.000
GLYMA20G01450 Glycine max GLYMA20G01450 I 0.000
GLYMA17G13010 Glycine max GLYMA17G13010 I 0.000
GLYMA07G28310 Glycine max GLYMA07G28310 I 0.000
GLYMA05G07980 Glycine max GLYMA05G07980 I 0.000
cassava2458.valid.m1 Manihot esculenta cassava2458.valid.m1 N 0.000