SIGB (Vitis vinifera)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04542 (Sigma70_r2) IPR007627 VIT_15s0024g00640 T324041_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
VIT_15s0024g00640.t01 Sigma 70 341 411

Links

Other Sigma 70 family TFs
Other Vitis vinifera TFs

46 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10005668.g Linum usitatissimum Lus10005668.g N 0.845
Aquca_013_00876 Aquilegia coerulea Aquca_013_00876 N 0.958
Bostr.25219s0090 Boechera stricta Bostr.25219s0090 N 0.958
Cagra.4395s0044 Capsella grandiflora Cagra.4395s0044 N 0.958
Carubv10008711m.g Capsella rubella Carubv10008711m.g N 0.958
Ciclev10030998m.g Citrus clementina Ciclev10030998m.g N 0.972
Eucgr.D01094 Eucalyptus grandis Eucgr.D01094 N 0.972
evm.TU.supercontig_73.29 Carica papaya evm.TU.supercontig_73.29 N 0.986
gene17946-v1.0-hybrid Fragaria vesca gene17946-v1.0-hybrid N 0.986
Gorai.004G253700 Gossypium raimondii Gorai.004G253700 N 0.901
Gorai.007G347300 Gossypium raimondii Gorai.007G347300 N 0.972
Lus10001339.g Linum usitatissimum Lus10001339.g N 0.704
mgf015824m Mimulus guttatus mgf015824m N 0.972
Lus10013642.g Linum usitatissimum Lus10013642.g N 0.704
Lus10020325.g Linum usitatissimum Lus10020325.g N 0.845
MDP0000157652 Malus domestica MDP0000157652 N 0.958
orange1.1g007404m.g Citrus sinensis orange1.1g007404m.g N 0.972
Pavir.Ia03759 Panicum virgatum Pavir.Ia03759 N 0.700
SapurV1A.1189s0050 Salix purpurea SapurV1A.1189s0050 N 0.958
SapurV1A.1953s0020 Salix purpurea SapurV1A.1953s0020 N 0.972
Thhalv10007187m.g Eutrema salsugineum Thhalv10007187m.g N 0.958
PK16345.1 Cannabis sativa PK16345.1 N 0.986
chr1.CM0017.250.nc Lotus japonicus chr1.CM0017.250.nc N 0.986
POPTR_0019s06100 Populus trichocarpa POPTR_0019s06100 N 0.944
SIGB Arabidopsis thaliana AT1G08540 N 0.958
Bo5g009070 Brassica oleracea Bo5g009070 N 0.944
Bra018617 Brassica rapa Bra018617 N 0.944
Bra030732 Brassica rapa Bra030732 N 0.958
SIGB Arabidopsis lyrata fgenesh2_kg.1__869__AT1G08540.1 N 0.958
GLYMA04G00330 Glycine max GLYMA04G00330 N 0.930
GSMUA_Achr7G04860_001 Musa acuminata GSMUA_Achr7G04860_001 N 0.915
GSMUA_Achr7G17330_001 Musa acuminata GSMUA_Achr7G17330_001 N 0.887
MTR_3g118290 Medicago truncatula MTR_3g118290 N 0.915
PGSC0003DMG400031111 Solanum tuberosum PGSC0003DMG400031111 N 0.930
POPTR_0013s06770 Populus trichocarpa POPTR_0013s06770 N 0.944
AMTR_s00011p00258380 Amborella trichopoda AMTR_s00011p00258380 N 0.958
PRUPE_ppa006657mg Prunus persica PRUPE_ppa006657mg N 0.972
Solyc01g081490.2 Solanum lycopersicum Solyc01g081490.2 N 0.944
TCM_025741 Theobroma cacao TCM_025741 N 0.986
Ca_04693 Cicer arietinum Ca_04693 N 0.901
Cla007091 Citrullus lanatus Cla007091 N 0.986
Pm025497 Prunus mume Pm025497 N 0.972
30148.m001412 Ricinus communis 30148.m001412 N 0.986
cassava14033.valid.m1 Manihot esculenta cassava14033.valid.m1 N 0.972
Cucsa.362600 Cucumis sativus Cucsa.362600 N 0.972
estExt_Genewise1.C_340313 Physcomitrella patens estExt_Genewise1.C_340313 N 0.761