GRMZM5G842484 (Zea mays)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 GRMZM5G842484 T330343_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
GRMZM5G842484_P01 Sox 524 592
GRMZM5G842484_P02 Sox 563 631

Links

Other Sox family TFs
Other Zea mays TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_29723 Aegilops tauschii F775_29723 I 0.647
mgf024995m Mimulus guttatus mgf024995m I 0.429
MLOC_27773 Hordeum vulgare MLOC_27773 I 0.638
Traes_1DS_C7F1E9F38 Triticum aestivum Traes_1DS_C7F1E9F38 I 0.647
Traes_1BS_15F9D276D Triticum aestivum Traes_1BS_15F9D276D I 0.647
Traes_1AS_3FCB35E65 Triticum aestivum Traes_1AS_3FCB35E65 I 0.647
ORGLA01G0051500 Oryza glaberrima ORGLA01G0051500 N 0.599
OPUNC02G20230 Oryza punctata OPUNC02G20230 N 0.548
ORGLA05G0049600 Oryza glaberrima ORGLA05G0049600 N 0.693
ORUFI01G05970 Oryza rufipogon ORUFI01G05970 N 0.599
ORUFI05G05850 Oryza rufipogon ORUFI05G05850 N 0.693
SSRP1-A Oryza sativa OS01G0184900 N 0.599
SSRP1-B Oryza sativa OS05G0182600 N 0.693
Sb03g003450 Sorghum bicolor Sb03g003450 N 0.597
Sb09g005650 Sorghum bicolor Sb09g005650 N 0.741
Si000646m.g Setaria italica Si000646m.g N 0.597
Si021575m.g Setaria italica Si021575m.g N 0.729
Si024096m.g Setaria italica Si024096m.g N 0.650
Traes_3AS_AAAAD30B5 Triticum aestivum Traes_3AS_AAAAD30B5 N 0.580
TRAES3BF096800150CFD_g Triticum aestivum TRAES3BF096800150CFD_g N 0.580
TRIUR3_14091 Triticum urartu TRIUR3_14091 N 0.580
Pavir.Ca01033 Panicum virgatum Pavir.Ca01033 N 0.735
Pavir.Ea00282 Panicum virgatum Pavir.Ea00282 N 0.597
Pavir.J08546 Panicum virgatum Pavir.J08546 N 0.597
Pavir.J10741 Panicum virgatum Pavir.J10741 N 0.651
Pavir.J20558 Panicum virgatum Pavir.J20558 N 0.735
OBART05G05520 Oryza barthii OBART05G05520 N 0.693
BGIOSGA019295 Oryza indica BGIOSGA019295 N 0.693
BRADI2G33580 Brachypodium distachyon BRADI2G33580 N 0.635
F775_28104 Aegilops tauschii F775_28104 N 0.580
GRMZM2G032252 Zea mays GRMZM2G032252 N 0.597
LPERR01G05200 Leersia perrieri LPERR01G05200 N 0.605
LPERR05G04880 Leersia perrieri LPERR05G04880 N 0.693
MLOC_6673 Hordeum vulgare MLOC_6673 N 0.561
OB01G15440 Oryza brachyantha OB01G15440 N 0.605
OB05G15230 Oryza brachyantha OB05G15230 N 0.693
OBART01G05540 Oryza barthii OBART01G05540 N 0.599
OPUNC05G05150 Oryza punctata OPUNC05G05150 N 0.693
OGLUM01G06010 Oryza glumaepatula OGLUM01G06010 N 0.599
OGLUM05G05400 Oryza glumaepatula OGLUM05G05400 N 0.693
OLONG_012679 Oryza longistaminata OLONG_012679 N 0.693
OLONG_023518 Oryza longistaminata OLONG_023518 N 0.599
OMERI01G05760 Oryza meridionalis OMERI01G05760 N 0.599
OMERI05G05210 Oryza meridionalis OMERI05G05210 N 0.693
ONIVA01G06280 Oryza nivara ONIVA01G06280 N 0.599
ONIVA05G05990 Oryza nivara ONIVA05G05990 N 0.693
OPUNC01G05380 Oryza punctata OPUNC01G05380 N 0.548
BGIOSGA002908 Oryza indica BGIOSGA002908 N 0.599