PPA12247 (Pristionchus pacificus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 PPA12247 T332181_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
PPA12247 Sox 43 85

Links

Other Sox family TFs
Other Pristionchus pacificus TFs

127 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI3G30410 Brachypodium distachyon BRADI3G30410 I 0.419
ENSCING00000000505 Ciona intestinalis ENSCING00000000505 I 0.470
ENSPSIG00000009504 Pelodiscus sinensis ENSPSIG00000009504 I 0.417
GLYMA01G33370 Glycine max GLYMA01G33370 I 0.419
GLYMA03G03500 Glycine max GLYMA03G03500 I 0.419
GRMZM2G074543 Zea mays GRMZM2G074543 I 0.419
GRMZM2G167824 Zea mays GRMZM2G167824 I 0.419
HETIRDRAFT_439796 Heterobasidion irregulare HETIRDRAFT_439796 I 0.424
LPERR02G20990 Leersia perrieri LPERR02G20990 I 0.419
LPERR10G11580 Leersia perrieri LPERR10G11580 I 0.419
MLOC_70653 Hordeum vulgare MLOC_70653 I 0.419
MTR_4g025900 Medicago truncatula MTR_4g025900 I 0.419
OB02G33040 Oryza brachyantha OB02G33040 I 0.419
OBART02G25670 Oryza barthii OBART02G25670 I 0.419
OBART10G15260 Oryza barthii OBART10G15260 I 0.419
OGLUM02G26190 Oryza glumaepatula OGLUM02G26190 I 0.419
OGLUM10G15140 Oryza glumaepatula OGLUM10G15140 I 0.419
OLONG_018621 Oryza longistaminata OLONG_018621 I 0.419
OMERI02G25190 Oryza meridionalis OMERI02G25190 I 0.419
OMERI10G11950 Oryza meridionalis OMERI10G11950 I 0.419
ONIVA02G28110 Oryza nivara ONIVA02G28110 I 0.419
ONIVA04G21490 Oryza nivara ONIVA04G21490 I 0.419
OPUNC02G23520 Oryza punctata OPUNC02G23520 I 0.419
OPUNC10G13730 Oryza punctata OPUNC10G13730 I 0.419
ORGLA02G0220100 Oryza glaberrima ORGLA02G0220100 I 0.419
ORUFI02G27080 Oryza rufipogon ORUFI02G27080 I 0.419
ORUFI10G16240 Oryza rufipogon ORUFI10G16240 I 0.419
YAB4 Oryza sativa OS02G0643200 I 0.419
YAB3 Oryza sativa OS10G0508300 I 0.419
PGSC0003DMG400025969 Solanum tuberosum PGSC0003DMG400025969 I 0.419
POPTR_0001s00240 Populus trichocarpa POPTR_0001s00240 I 0.419
POPTR_0002s14600 Populus trichocarpa POPTR_0002s14600 I 0.419
POPTR_0003s11230 Populus trichocarpa POPTR_0003s11230 I 0.419
POPTR_0014s06210 Populus trichocarpa POPTR_0014s06210 I 0.419
PRUPE_ppa010905mg Prunus persica PRUPE_ppa010905mg I 0.419
PRUPE_ppa011209mg Prunus persica PRUPE_ppa011209mg I 0.419
Sb01g017560 Sorghum bicolor Sb01g017560 I 0.419
scaffold_600397.1 Arabidopsis lyrata scaffold_600397.1 I 0.469
Si036788m.g Setaria italica Si036788m.g I 0.419
Solyc01g091010.2 Solanum lycopersicum Solyc01g091010.2 I 0.419
TCM_005549 Theobroma cacao TCM_005549 I 0.419
Traes_1DL_C5AF9D06A Triticum aestivum Traes_1DL_C5AF9D06A I 0.419
TRIUR3_27479 Triticum urartu TRIUR3_27479 I 0.419
VIT_15s0048g00550 Vitis vinifera VIT_15s0048g00550 I 0.419
Ca_25981 Cicer arietinum Ca_25981 I 0.419
Cla011745 Citrullus lanatus Cla011745 I 0.419
Pm017846 Prunus mume Pm017846 I 0.419
Pm023555 Prunus mume Pm023555 I 0.419
28200.m000191 Ricinus communis 28200.m000191 I 0.419
30174.m008839 Ricinus communis 30174.m008839 I 0.419
cassava13963.valid.m1 Manihot esculenta cassava13963.valid.m1 I 0.419
cassava17722.valid.m1 Manihot esculenta cassava17722.valid.m1 I 0.419
cassava30083.valid.m1 Manihot esculenta cassava30083.valid.m1 I 0.419
cassava43469.valid.m1 Manihot esculenta cassava43469.valid.m1 I 0.419
Cucsa.302100 Cucumis sativus Cucsa.302100 I 0.419
Cucsa.320600 Cucumis sativus Cucsa.320600 I 0.419
mgf003166m Mimulus guttatus mgf003166m I 0.419
mgf011463m Mimulus guttatus mgf011463m I 0.419
mgf015806m Mimulus guttatus mgf015806m I 0.419
Ciclev10021834m.g Citrus clementina Ciclev10021834m.g I 0.419
Ciclev10022170m.g Citrus clementina Ciclev10022170m.g I 0.419
Eucgr.E01474 Eucalyptus grandis Eucgr.E01474 I 0.419
evm.TU.supercontig_145.3 Carica papaya evm.TU.supercontig_145.3 I 0.419
gene32251-v1.0-hybrid Fragaria vesca gene32251-v1.0-hybrid I 0.419
Gorai.001G174800 Gossypium raimondii Gorai.001G174800 I 0.419
Lus10010361.g Linum usitatissimum Lus10010361.g I 0.419
Lus10036496.g Linum usitatissimum Lus10036496.g I 0.419
MDP0000192940 Malus domestica MDP0000192940 I 0.419
MDP0000298333 Malus domestica MDP0000298333 I 0.419
orange1.1g027215m.g Citrus sinensis orange1.1g027215m.g I 0.419
orange1.1g028144m.g Citrus sinensis orange1.1g028144m.g I 0.419
Pavir.Ib03707 Panicum virgatum Pavir.Ib03707 I 0.419
SapurV1A.0033s0530 Salix purpurea SapurV1A.0033s0530 I 0.419
SapurV1A.0217s0100 Salix purpurea SapurV1A.0217s0100 I 0.419
SapurV1A.0248s0170 Salix purpurea SapurV1A.0248s0170 I 0.419
SapurV1A.0634s0130 Salix purpurea SapurV1A.0634s0130 I 0.419
SapurV1A.1275s0050 Salix purpurea SapurV1A.1275s0050 I 0.419
SapurV1A.2672s0010 Salix purpurea SapurV1A.2672s0010 I 0.419
SNAPOd2T00002710001 Oikopleura dioica SNAPOd2T00002710001 I 0.424
estExt_fgenesh3_kg.C_170031 Heterobasidion annosum estExt_fgenesh3_kg.C_170031 I 0.424
LjSGA_107961.1 Lotus japonicus LjSGA_107961.1 I 0.419
PEQ_0000291001 Parascaris equorum PEQ_0000291001 I 0.465
SBAD_0000070901 Soboliphyme baturini SBAD_0000070901 I 0.470
CpipJ_CPIJ003178 Culex pipiens CpipJ_CPIJ003178 N 0.444
WUBG_06999 Wuchereria bancrofti WUBG_06999 N 0.505
CBN04053 Caenorhabditis brenneri CBN04053 N 0.471
CPIJ003178 Culex quinquefasciatus CPIJ003178 N 0.444
L798_00437 Zootermopsis nevadensis L798_00437 N 0.438
LOAG_08062 Loa loa LOAG_08062 N 0.505
NEMVEDRAFT_v1g59568 Nematostella vectensis NEMVEDRAFT_v1g59568 N 0.441
PHUM393920 Pediculus humanus PHUM393920 N 0.437
WBGene00237022 Onchocerca volvulus WBGene00237022 N 0.503
fgenesh2_pg.scaffold_4000274 Monosiga brevicollis fgenesh2_pg.scaffold_4000274 N 0.444
Ocbimv22010533m.g Octopus bimaculoides Ocbimv22010533m.g N 0.419
Sakowv30021656m.g Saccoglossus kowalevskii Sakowv30021656m.g N 0.516
AEPI010254 Anopheles epiroticus AEPI010254 N 0.444
AMAM014030 Anopheles maculatus AMAM014030 N 0.438
AMIN005634 Anopheles minimus AMIN005634 N 0.438
ASIS014204 Anopheles sinensis ASIS014204 N 0.453
BGLB013489 Biomphalaria glabrata BGLB013489 N 0.435
ACAC_0000798501 Angiostrongylus cantonensis ACAC_0000798501 N 0.502
ACAC_0000857301 Angiostrongylus cantonensis ACAC_0000857301 N 0.415
ACOC_0000653601 Angiostrongylus costaricensis ACOC_0000653601 N 0.415
ACOC_0001190001 Angiostrongylus costaricensis ACOC_0001190001 N 0.502
ALUE_0001190701 Ascaris lumbricoides ALUE_0001190701 N 0.460
ANCCAN_19939 Ancylostoma caninum ANCCAN_19939 N 0.512
ANCDUO_24269 Ancylostoma duodenale ANCDUO_24269 N 0.506
BTMF_0000229601 Brugia timori BTMF_0000229601 N 0.503
BTMF_0000420901 Brugia timori BTMF_0000420901 N 0.442
D918_03887 Trichuris suis D918_03887 N 0.425
DME_0000590001 Dracunculus medinensis DME_0000590001 N 0.429
EEL_0000629001 Elaeophora elaphi EEL_0000629001 N 0.466
EVEC_0001116801 Enterobius vermicularis EVEC_0001116801 N 0.415
GPUH_0000029001 Gongylonema pulchrum GPUH_0000029001 N 0.426
GPUH_0002275001 Gongylonema pulchrum GPUH_0002275001 N 0.467
HPBE_0001796801 Heligmosomoides bakeri HPBE_0001796801 N 0.494
HPBE_0002310801 Heligmosomoides bakeri HPBE_0002310801 N 0.430
nAv.1.0.1.g09805 Acanthocheilonema viteae nAv.1.0.1.g09805 N 0.466
NECAME_14932 Necator americanus NECAME_14932 N 0.513
OESDEN_18796 Oesophagostomum dentatum OESDEN_18796 N 0.598
OFLC_0000496201 Onchocerca flexuosa OFLC_0000496201 N 0.493
PEQ_0000212901 Parascaris equorum PEQ_0000212901 N 0.434
scaffold593-EXSNAP2012.5 Pristionchus exspectatus scaffold593-EXSNAP2012.5 N 0.693
SMUV_0000634201 Syphacia muris SMUV_0000634201 N 0.464
SVUK_0001721701 Strongylus vulgaris SVUK_0001721701 N 0.467
TCLT_0000071201 Thelazia callipaeda TCLT_0000071201 N 0.467
TCNE_0000520101 Toxocara canis TCNE_0000520101 N 0.423