Cflo_06133--XP_394373.1_APIME (Camponotus floridanus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Cflo_06133--XP_394373.1_APIME T333625_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.427 0.239
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.427 0.239
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.427 0.239
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.420 0.261
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.420 0.261
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cflo_06133--XP_394373.1_APIME Sox 153 198

Links

Other Sox family TFs
Other Camponotus floridanus TFs

481 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NAC002 Arabidopsis thaliana AT1G01720 D
NAC48 Oryza sativa OS01G0884300 D
AMTR_s00022p00160350 Amborella trichopoda AMTR_s00022p00160350 I
NAC026 Arabidopsis thaliana AT1G62700 I
BGIOSGA000374 Oryza indica BGIOSGA000374 I
BGIOSGA014034 Oryza indica BGIOSGA014034 I
BGIOSGA018048 Oryza indica BGIOSGA018048 I
BGIOSGA019897 Oryza indica BGIOSGA019897 I
BGIOSGA026695 Oryza indica BGIOSGA026695 I
BGIOSGA037382 Oryza indica BGIOSGA037382 I
Bo5g001100 Brassica oleracea Bo5g001100 I
Bra033239 Brassica rapa Bra033239 I
BRADI1G32660 Brachypodium distachyon BRADI1G32660 I
BRADI2G03467 Brachypodium distachyon BRADI2G03467 I
BRADI2G57100 Brachypodium distachyon BRADI2G57100 I
BRADI4G07527 Brachypodium distachyon BRADI4G07527 I
F775_20638 Aegilops tauschii F775_20638 I
F775_28813 Aegilops tauschii F775_28813 I
F775_30297 Aegilops tauschii F775_30297 I
GLYMA05G32850 Glycine max GLYMA05G32850 I
GLYMA14G24220 Glycine max GLYMA14G24220 I
GRMZM2G014653 Zea mays GRMZM2G014653 I
GRMZM2G063522 Zea mays GRMZM2G063522 I
GRMZM2G079632 Zea mays GRMZM2G079632 I
GRMZM2G083347 Zea mays GRMZM2G083347 I
GRMZM2G139700 Zea mays GRMZM2G139700 I
GRMZM2G162739 Zea mays GRMZM2G162739 I
GRMZM2G167018 Zea mays GRMZM2G167018 I
GSMUA_Achr10G08120_001 Musa acuminata GSMUA_Achr10G08120_001 I
GSMUA_Achr4G02390_001 Musa acuminata GSMUA_Achr4G02390_001 I
GSMUA_Achr4G32010_001 Musa acuminata GSMUA_Achr4G32010_001 I
GSMUA_Achr6G18720_001 Musa acuminata GSMUA_Achr6G18720_001 I
GSMUA_Achr6G31580_001 Musa acuminata GSMUA_Achr6G31580_001 I
GSMUA_Achr7G21780_001 Musa acuminata GSMUA_Achr7G21780_001 I
GSMUA_Achr7G23250_001 Musa acuminata GSMUA_Achr7G23250_001 I
GSMUA_Achr9G10040_001 Musa acuminata GSMUA_Achr9G10040_001 I
LPERR01G00270 Leersia perrieri LPERR01G00270 I
LPERR01G34090 Leersia perrieri LPERR01G34090 I
LPERR05G13140 Leersia perrieri LPERR05G13140 I
LPERR05G13490 Leersia perrieri LPERR05G13490 I
LPERR07G06440 Leersia perrieri LPERR07G06440 I
LPERR08G17020 Leersia perrieri LPERR08G17020 I
LPERR12G09780 Leersia perrieri LPERR12G09780 I
MLOC_13932 Hordeum vulgare MLOC_13932 I
MLOC_59162 Hordeum vulgare MLOC_59162 I
MLOC_65286 Hordeum vulgare MLOC_65286 I
MTR_1g008740 Medicago truncatula MTR_1g008740 I
MTR_8g094580 Medicago truncatula MTR_8g094580 I
OB01G48340 Oryza brachyantha OB01G48340 I
OB05G24820 Oryza brachyantha OB05G24820 I
OBART01G39590 Oryza barthii OBART01G39590 I
OBART05G16540 Oryza barthii OBART05G16540 I
OGLUM01G43820 Oryza glumaepatula OGLUM01G43820 I
OGLUM04G30580 Oryza glumaepatula OGLUM04G30580 I
OGLUM05G17550 Oryza glumaepatula OGLUM05G17550 I
OGLUM05G17980 Oryza glumaepatula OGLUM05G17980 I
OGLUM08G21360 Oryza glumaepatula OGLUM08G21360 I
OGLUM12G13410 Oryza glumaepatula OGLUM12G13410 I
OLONG_023103 Oryza longistaminata OLONG_023103 I
OMERI01G36460 Oryza meridionalis OMERI01G36460 I
OMERI05G14410 Oryza meridionalis OMERI05G14410 I
OMERI12G08420 Oryza meridionalis OMERI12G08420 I
ONIVA01G44460 Oryza nivara ONIVA01G44460 I
ONIVA04G29890 Oryza nivara ONIVA04G29890 I
ONIVA05G17220 Oryza nivara ONIVA05G17220 I
ONIVA05G17670 Oryza nivara ONIVA05G17670 I
ONIVA08G22710 Oryza nivara ONIVA08G22710 I
ONIVA12G11920 Oryza nivara ONIVA12G11920 I
OPUNC01G38300 Oryza punctata OPUNC01G38300 I
OPUNC05G14600 Oryza punctata OPUNC05G14600 I
OPUNC08G18240 Oryza punctata OPUNC08G18240 I
OPUNC12G10470 Oryza punctata OPUNC12G10470 I
ORGLA01G0334900 Oryza glaberrima ORGLA01G0334900 I
ORGLA04G0270600 Oryza glaberrima ORGLA04G0270600 I
ORGLA05G0143100 Oryza glaberrima ORGLA05G0143100 I
ORGLA05G0146600 Oryza glaberrima ORGLA05G0146600 I
ORGLA08G0177600 Oryza glaberrima ORGLA08G0177600 I
ORUFI01G42940 Oryza rufipogon ORUFI01G42940 I
ORUFI04G32410 Oryza rufipogon ORUFI04G32410 I
ORUFI05G17750 Oryza rufipogon ORUFI05G17750 I
ORUFI08G22550 Oryza rufipogon ORUFI08G22550 I
ORUFI10G07040 Oryza rufipogon ORUFI10G07040 I
OS04G0691300 Oryza sativa OS04G0691300 I
OS05G0415400 Oryza sativa OS05G0415400 I
OS08G0511200 Oryza sativa OS08G0511200 I
OS12G0477400 Oryza sativa OS12G0477400 I
PGSC0003DMG400009920 Solanum tuberosum PGSC0003DMG400009920 I
PGSC0003DMG400029593 Solanum tuberosum PGSC0003DMG400029593 I
POPTR_0004s04920 Populus trichocarpa POPTR_0004s04920 I
POPTR_0005s07060 Populus trichocarpa POPTR_0005s07060 I
POPTR_0007s04780 Populus trichocarpa POPTR_0007s04780 I
Sb02g006680 Sorghum bicolor Sb02g006680 I
Sb03g000330 Sorghum bicolor Sb03g000330 I
Sb03g041920 Sorghum bicolor Sb03g041920 I
Sb07g005610 Sorghum bicolor Sb07g005610 I
Sb08g014060 Sorghum bicolor Sb08g014060 I
ATAF1 Arabidopsis lyrata scaffold_100066.1 I
SELMODRAFT_69090 Selaginella moellendorffii SELMODRAFT_69090 I
SELMODRAFT_71305 Selaginella moellendorffii SELMODRAFT_71305 I
Si002413m.g Setaria italica Si002413m.g I
Si004195m.g Setaria italica Si004195m.g I
Si010680m.g Setaria italica Si010680m.g I
Si022714m.g Setaria italica Si022714m.g I
Si022924m.g Setaria italica Si022924m.g I
Si030752m.g Setaria italica Si030752m.g I
Si036303m.g Setaria italica Si036303m.g I
Solyc04g009440.2 Solanum lycopersicum Solyc04g009440.2 I
Solyc08g074300.2 Solanum lycopersicum Solyc08g074300.2 I
Solyc11g017470.1 Solanum lycopersicum Solyc11g017470.1 I
TCM_029796 Theobroma cacao TCM_029796 I
TCM_035160 Theobroma cacao TCM_035160 I
TRAES3BF002300010CFD_g Triticum aestivum TRAES3BF002300010CFD_g I
Traes_7AL_74CC91D39 Triticum aestivum Traes_7AL_74CC91D39 I
Traes_7DL_BDD45DB24 Triticum aestivum Traes_7DL_BDD45DB24 I
TRIUR3_14109 Triticum urartu TRIUR3_14109 I
TRIUR3_29250 Triticum urartu TRIUR3_29250 I
VIT_06s0004g00020 Vitis vinifera VIT_06s0004g00020 I
anac032 Vitis vinifera VIT_18s0001g02300 I
Cla011742 Citrullus lanatus Cla011742 I
Cla023594 Citrullus lanatus Cla023594 I
cassava27052.m1 Manihot esculenta cassava27052.m1 I
cassava28909.valid.m1 Manihot esculenta cassava28909.valid.m1 I
cassava39074.m1 Manihot esculenta cassava39074.m1 I
e_gw1.117.35.1 Physcomitrella patens e_gw1.117.35.1 I
e_gw1.140.53.1 Physcomitrella patens e_gw1.140.53.1 I
e_gw1.164.18.1 Physcomitrella patens e_gw1.164.18.1 I
e_gw1.164.26.1 Physcomitrella patens e_gw1.164.26.1 I
e_gw1.259.32.1 Physcomitrella patens e_gw1.259.32.1 I
e_gw1.259.4.1 Physcomitrella patens e_gw1.259.4.1 I
e_gw1.5.134.1 Physcomitrella patens e_gw1.5.134.1 I
fgenesh1_pg.scaffold_182000024 Physcomitrella patens fgenesh1_pg.scaffold_182000024 I
gw1.1.690.1 Physcomitrella patens gw1.1.690.1 I
gw1.6.394.1 Physcomitrella patens gw1.6.394.1 I
mgf002365m Mimulus guttatus mgf002365m I
mgf004020m Mimulus guttatus mgf004020m I
mgf013201m Mimulus guttatus mgf013201m I
Aquca_014_00255 Aquilegia coerulea Aquca_014_00255 I
Bostr.0556s0555 Boechera stricta Bostr.0556s0555 I
Bostr.5325s0094 Boechera stricta Bostr.5325s0094 I
Cagra.1968s0112 Capsella grandiflora Cagra.1968s0112 I
Carubv10009926m.g Capsella rubella Carubv10009926m.g I
Gorai.005G088800 Gossypium raimondii Gorai.005G088800 I
Gorai.006G088400 Gossypium raimondii Gorai.006G088400 I
Gorai.010G051900 Gossypium raimondii Gorai.010G051900 I
Pavir.Ba03301 Panicum virgatum Pavir.Ba03301 I
Pavir.Bb00806 Panicum virgatum Pavir.Bb00806 I
Pavir.Ca02208 Panicum virgatum Pavir.Ca02208 I
Pavir.Cb00769 Panicum virgatum Pavir.Cb00769 I
Pavir.Ea00010 Panicum virgatum Pavir.Ea00010 I
Pavir.Ea03621 Panicum virgatum Pavir.Ea03621 I
Pavir.Ga00022 Panicum virgatum Pavir.Ga00022 I
Pavir.Ia03443 Panicum virgatum Pavir.Ia03443 I
Pavir.Ib01528 Panicum virgatum Pavir.Ib01528 I
SapurV1A.0039s0530 Salix purpurea SapurV1A.0039s0530 I
SapurV1A.0076s0070 Salix purpurea SapurV1A.0076s0070 I
SapurV1A.0093s0260 Salix purpurea SapurV1A.0093s0260 I
SapurV1A.0311s0230 Salix purpurea SapurV1A.0311s0230 I
SapurV1A.0365s0200 Salix purpurea SapurV1A.0365s0200 I
SapurV1A.0740s0040 Salix purpurea SapurV1A.0740s0040 I
SapurV1A.0869s0210 Salix purpurea SapurV1A.0869s0210 I
SapurV1A.2021s0010 Salix purpurea SapurV1A.2021s0010 I
SapurV1A.3767s0010 Salix purpurea SapurV1A.3767s0010 I
Thhalv10023502m.g Eutrema salsugineum Thhalv10023502m.g I
PK26157.1 Cannabis sativa PK26157.1 I
BGIOSGA023457 Oryza indica BGIOSGA023457 N
F775_26920 Aegilops tauschii F775_26920 N
GLYMA08G18470 Glycine max GLYMA08G18470 N
GSMUA_Achr3G23360_001 Musa acuminata GSMUA_Achr3G23360_001 N
GSMUA_Achr6G30050_001 Musa acuminata GSMUA_Achr6G30050_001 N
GSMUA_Achr9G10210_001 Musa acuminata GSMUA_Achr9G10210_001 N
LPERR06G20430 Leersia perrieri LPERR06G20430 N
MLOC_25708 Hordeum vulgare MLOC_25708 N
MLOC_53744 Hordeum vulgare MLOC_53744 N
MTR_2g064470 Medicago truncatula MTR_2g064470 N
MTR_3g096400 Medicago truncatula MTR_3g096400 N
OBART04G25950 Oryza barthii OBART04G25950 N
OBART06G24550 Oryza barthii OBART06G24550 N
OGLUM06G25850 Oryza glumaepatula OGLUM06G25850 N
OLONG_010248 Oryza longistaminata OLONG_010248 N
OMERI04G21180 Oryza meridionalis OMERI04G21180 N
OMERI06G24740 Oryza meridionalis OMERI06G24740 N
ONIVA02G35380 Oryza nivara ONIVA02G35380 N
OPUNC06G22270 Oryza punctata OPUNC06G22270 N
ORGLA04G0226100 Oryza glaberrima ORGLA04G0226100 N
ORGLA06G0205600 Oryza glaberrima ORGLA06G0205600 N
ORUFI06G26420 Oryza rufipogon ORUFI06G26420 N
OS06G0675600 Oryza sativa OS06G0675600 N
PGSC0003DMG400022134 Solanum tuberosum PGSC0003DMG400022134 N
PRUPE_ppa008801mg Prunus persica PRUPE_ppa008801mg N
Sb10g027100 Sorghum bicolor Sb10g027100 N
Si006975m.g Setaria italica Si006975m.g N
Si014180m.g Setaria italica Si014180m.g N
Traes_2AL_CA89051FD Triticum aestivum Traes_2AL_CA89051FD N
Traes_7AL_BE3253C8F Triticum aestivum Traes_7AL_BE3253C8F N
TRIUR3_03895 Triticum urartu TRIUR3_03895 N
TRIUR3_34020 Triticum urartu TRIUR3_34020 N
Ca_13537 Cicer arietinum Ca_13537 N
Cla023574 Citrullus lanatus Cla023574 N
29650.m000275 Ricinus communis 29650.m000275 N
Cagra.6372s0006 Capsella grandiflora Cagra.6372s0006 N
Carubv10011081m.g Capsella rubella Carubv10011081m.g N
Ciclev10021117m.g Citrus clementina Ciclev10021117m.g N
Eucgr.F01449 Eucalyptus grandis Eucgr.F01449 N
gene10469-v1.0-hybrid Fragaria vesca gene10469-v1.0-hybrid N
Pavir.Db00380 Panicum virgatum Pavir.Db00380 N
Pavir.Fb00532 Panicum virgatum Pavir.Fb00532 N
Pavir.Gb00488 Panicum virgatum Pavir.Gb00488 N
PK23481.1 Cannabis sativa PK23481.1 N
chr3.CM0279.430.nd Lotus japonicus chr3.CM0279.430.nd N