Aquca_013_00142 (Aquilegia coerulea)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Aquca_013_00142 T334369_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.490 0.624
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.490 0.624
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Aquca_013_00142.1 Sox 178 243
Aquca_013_00142.1 Sox 295 361
Aquca_013_00142.1 Sox 423 491

Links

Other Sox family TFs
Other Aquilegia coerulea TFs

56 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava10826.m1 Manihot esculenta cassava10826.m1 N 0.000
TCM_030733 Theobroma cacao TCM_030733 N 0.000
Traes_2BS_D007D6598 Triticum aestivum Traes_2BS_D007D6598 N 0.000
Traes_2DS_CCA2FCCAD Triticum aestivum Traes_2DS_CCA2FCCAD N 0.000
Traes_5BL_1E751EF1F Triticum aestivum Traes_5BL_1E751EF1F N 0.000
Traes_5BL_A7C4DAE11 Triticum aestivum Traes_5BL_A7C4DAE11 N 0.000
Traes_5DL_B89CD8432 Triticum aestivum Traes_5DL_B89CD8432 N 0.000
Pm012019 Prunus mume Pm012019 N 0.000
Pm015021 Prunus mume Pm015021 N 0.000
27613.m000642 Ricinus communis 27613.m000642 N 0.000
TCM_002319 Theobroma cacao TCM_002319 N 0.000
cassava34699.m1 Manihot esculenta cassava34699.m1 N 0.000
Aquca_005_00234 Aquilegia coerulea Aquca_005_00234 N 0.000
Ciclev10007927m.g Citrus clementina Ciclev10007927m.g N 0.000
gene21592-v1.0-hybrid Fragaria vesca gene21592-v1.0-hybrid N 0.000
Gorai.001G192800 Gossypium raimondii Gorai.001G192800 N 0.000
MDP0000804652 Malus domestica MDP0000804652 N 0.000
Pavir.Ba00562 Panicum virgatum Pavir.Ba00562 N 0.000
Pavir.Bb03224 Panicum virgatum Pavir.Bb03224 N 0.000
PDK_20s1411471g003 Phoenix dactylifera PDK_20s1411471g003 N 0.000
OMERI07G16830 Oryza meridionalis OMERI07G16830 N 0.000
BRADI1G23350 Brachypodium distachyon BRADI1G23350 N 0.000
F775_15940 Aegilops tauschii F775_15940 N 0.000
F775_28371 Aegilops tauschii F775_28371 N 0.000
GRMZM2G098517 Zea mays GRMZM2G098517 N 0.000
LPERR07G17460 Leersia perrieri LPERR07G17460 N 0.000
MLOC_65838 Hordeum vulgare MLOC_65838 N 0.000
OB07G25870 Oryza brachyantha OB07G25870 N 0.000
OBART07G20130 Oryza barthii OBART07G20130 N 0.000
OGLUM07G19910 Oryza glumaepatula OGLUM07G19910 N 0.000
BGIOSGA026022 Oryza indica BGIOSGA026022 N 0.000
OMERI10G05450 Oryza meridionalis OMERI10G05450 N 0.000
ONIVA07G18570 Oryza nivara ONIVA07G18570 N 0.000
OPUNC07G19030 Oryza punctata OPUNC07G19030 N 0.000
ORGLA07G0258500 Oryza glaberrima ORGLA07G0258500 N 0.000
ORUFI07G20980 Oryza rufipogon ORUFI07G20980 N 0.000
CIGR2 Oryza sativa OS07G0583600 N 0.000
PRUPE_ppa003702mg Prunus persica PRUPE_ppa003702mg N 0.000
Sb02g037650 Sorghum bicolor Sb02g037650 N 0.000
Si029418m.g Setaria italica Si029418m.g N 0.000