gene21592-v1.0-hybrid (Fragaria vesca)
GRAS

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03514 (GRAS) IPR005202 gene21592-v1.0-hybrid T202572_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
mrna21592.1-v1.0-hybrid GRAS 164 534

Links

Other GRAS family TFs
Other Fragaria vesca TFs

120 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pm015021 Prunus mume Pm015021 N 0.954
PRUPE_ppa003702mg Prunus persica PRUPE_ppa003702mg N 0.951
MDP0000152670 Malus domestica MDP0000152670 N 0.932
MDP0000804652 Malus domestica MDP0000804652 N 0.932
POPTR_0014s16230 Populus trichocarpa POPTR_0014s16230 N 0.908
SapurV1A.0054s0160 Salix purpurea SapurV1A.0054s0160 N 0.905
TCM_002319 Theobroma cacao TCM_002319 N 0.900
GLYMA02G47640 Glycine max GLYMA02G47640 N 0.897
VIT_12s0057g00560 Vitis vinifera VIT_12s0057g00560 N 0.897
Gorai.001G192800 Gossypium raimondii Gorai.001G192800 N 0.897
GLYMA14G01020 Glycine max GLYMA14G01020 N 0.894
Gorai.007G167000 Gossypium raimondii Gorai.007G167000 N 0.894
MTR_5g097480 Medicago truncatula MTR_5g097480 N 0.886
cassava34106.m1 Manihot esculenta cassava34106.m1 N 0.884
Ca_09786 Cicer arietinum Ca_09786 N 0.883
evm.TU.supercontig_136.17 Carica papaya evm.TU.supercontig_136.17 N 0.883
cassava8885.m1 Manihot esculenta cassava8885.m1 N 0.877
29949.m000124 Ricinus communis 29949.m000124 N 0.875
orange1.1g009376m.g Citrus sinensis orange1.1g009376m.g N 0.862
Ciclev10014845m.g Citrus clementina Ciclev10014845m.g N 0.859
Cla001429 Citrullus lanatus Cla001429 N 0.854
PGSC0003DMG400006132 Solanum tuberosum PGSC0003DMG400006132 N 0.848
Solyc07g047950.1 Solanum lycopersicum Solyc07g047950.1 N 0.848
Eucgr.A01051 Eucalyptus grandis Eucgr.A01051 N 0.848
PK09018.1 Cannabis sativa PK09018.1 N 0.848
Cucsa.120390 Cucumis sativus Cucsa.120390 N 0.846
Lus10006369.g Linum usitatissimum Lus10006369.g N 0.841
Bo9g009240 Brassica oleracea Bo9g009240 N 0.840
Lus10012323.g Linum usitatissimum Lus10012323.g N 0.838
PAT1 Arabidopsis thaliana AT5G48150 N 0.832
cassava10826.m1 Manihot esculenta cassava10826.m1 N 0.827
SCL5 Vitis vinifera VIT_19s0090g01740 N 0.824
Aquca_005_00234 Aquilegia coerulea Aquca_005_00234 N 0.824
Cagra.2766s0005 Capsella grandiflora Cagra.2766s0005 N 0.824
Carubv10026289m.g Capsella rubella Carubv10026289m.g N 0.824
TCM_030733 Theobroma cacao TCM_030733 N 0.822
27613.m000642 Ricinus communis 27613.m000642 N 0.821
PAT1 Arabidopsis lyrata scaffold_801100.1 N 0.818
Bostr.5224s0004 Boechera stricta Bostr.5224s0004 N 0.818
cassava34699.m1 Manihot esculenta cassava34699.m1 N 0.816
Bra020715 Brassica rapa Bra020715 N 0.810
Bo2g149670 Brassica oleracea Bo2g149670 N 0.808
Bo9g009260 Brassica oleracea Bo9g009260 N 0.808
Bra036185 Brassica rapa Bra036185 N 0.808
Pm012019 Prunus mume Pm012019 N 0.799
SapurV1A.0030s0420 Salix purpurea SapurV1A.0030s0420 N 0.794
Bo7g089080 Brassica oleracea Bo7g089080 N 0.789
Thhalv10004053m.g Eutrema salsugineum Thhalv10004053m.g N 0.789
SCL5 Populus trichocarpa POPTR_0001s37270 N 0.786
gene03551-v1.0-hybrid Fragaria vesca gene03551-v1.0-hybrid N 0.786
Bra037509 Brassica rapa Bra037509 N 0.784
Gorai.009G446100 Gossypium raimondii Gorai.009G446100 N 0.783
Lus10003772.g Linum usitatissimum Lus10003772.g N 0.783
MDP0000205236 Malus domestica MDP0000205236 N 0.780
MDP0000284679 Malus domestica MDP0000284679 N 0.780
PRUPE_ppa004136mg Prunus persica PRUPE_ppa004136mg N 0.778
Aquca_028_00248 Aquilegia coerulea Aquca_028_00248 N 0.778
Gorai.002G096300 Gossypium raimondii Gorai.002G096300 N 0.778
Ciclev10007927m.g Citrus clementina Ciclev10007927m.g N 0.775
Solyc07g065270.1 Solanum lycopersicum Solyc07g065270.1 N 0.772
Lus10016596.g Linum usitatissimum Lus10016596.g N 0.771
PGSC0003DMG400022187 Solanum tuberosum PGSC0003DMG400022187 N 0.767
evm.TU.supercontig_12.194 Carica papaya evm.TU.supercontig_12.194 N 0.764
PDK_20s1411471g003 Phoenix dactylifera PDK_20s1411471g003 N 0.753
GSMUA_Achr8G03610_001 Musa acuminata GSMUA_Achr8G03610_001 N 0.750
PK15082.1 Cannabis sativa PK15082.1 N 0.748
LjSGA_018703.2 Lotus japonicus LjSGA_018703.2 N 0.748
Bra026077 Brassica rapa Bra026077 N 0.747
AMTR_s00088p00161000 Amborella trichopoda AMTR_s00088p00161000 N 0.743
SCL5 Arabidopsis thaliana AT1G50600 N 0.743
SCL5 Arabidopsis lyrata fgenesh2_kg.1__4145__AT1G50600.1 N 0.743
Thhalv10002541m.g Eutrema salsugineum Thhalv10002541m.g N 0.742
CIGR2 Oryza sativa OS07G0583600 N 0.739
Bostr.19424s0023 Boechera stricta Bostr.19424s0023 N 0.739
Bo6g022330 Brassica oleracea Bo6g022330 N 0.737
Bra018860 Brassica rapa Bra018860 N 0.737
Bostr.26675s0117 Boechera stricta Bostr.26675s0117 N 0.737
SCL21 Arabidopsis lyrata scaffold_303269.1 N 0.734
Eucgr.F03523 Eucalyptus grandis Eucgr.F03523 N 0.734
Thhalv10011379m.g Eutrema salsugineum Thhalv10011379m.g N 0.732
PDK_20s1421311g003 Phoenix dactylifera PDK_20s1421311g003 N 0.731
Cagra.7055s0004 Capsella grandiflora Cagra.7055s0004 N 0.729
Carubv10008830m.g Capsella rubella Carubv10008830m.g N 0.729
SCL21 Arabidopsis thaliana AT2G04890 N 0.726
SCL13 Vitis vinifera VIT_00s0463g00020 N 0.726
Cla004565 Citrullus lanatus Cla004565 N 0.726
Bo7g030310 Brassica oleracea Bo7g030310 N 0.725
Bra015156 Brassica rapa Bra015156 N 0.723
Carubv10015685m.g Capsella rubella Carubv10015685m.g N 0.723
Ca_13855 Cicer arietinum Ca_13855 N 0.718
Cagra.1158s0007 Capsella grandiflora Cagra.1158s0007 N 0.717
OMERI07G16830 Oryza meridionalis OMERI07G16830 N 0.715
OPUNC07G19030 Oryza punctata OPUNC07G19030 N 0.715
BGIOSGA026022 Oryza indica BGIOSGA026022 N 0.713
BRADI1G23350 Brachypodium distachyon BRADI1G23350 N 0.713
OGLUM07G19910 Oryza glumaepatula OGLUM07G19910 N 0.713
ONIVA07G18570 Oryza nivara ONIVA07G18570 N 0.713
ORGLA07G0258500 Oryza glaberrima ORGLA07G0258500 N 0.713
ORUFI07G20980 Oryza rufipogon ORUFI07G20980 N 0.713
GLYMA02G46730 Glycine max GLYMA02G46730 N 0.710
OB07G25870 Oryza brachyantha OB07G25870 N 0.710
OBART07G20130 Oryza barthii OBART07G20130 N 0.710
OMERI10G05450 Oryza meridionalis OMERI10G05450 N 0.710
Traes_2BS_D007D6598 Triticum aestivum Traes_2BS_D007D6598 N 0.710
GLYMA14G01960 Glycine max GLYMA14G01960 N 0.707
LPERR07G17460 Leersia perrieri LPERR07G17460 N 0.707
OBART10G07700 Oryza barthii OBART10G07700 N 0.707
OGLUM10G07400 Oryza glumaepatula OGLUM10G07400 N 0.707
ORGLA10G0063900 Oryza glaberrima ORGLA10G0063900 N 0.707
ORUFI10G08100 Oryza rufipogon ORUFI10G08100 N 0.707
Cucsa.042310 Cucumis sativus Cucsa.042310 N 0.707
Pavir.Ba00562 Panicum virgatum Pavir.Ba00562 N 0.707
BGIOSGA032058 Oryza indica BGIOSGA032058 N 0.705
GRMZM2G431309 Zea mays GRMZM2G431309 N 0.705
OLONG_015869 Oryza longistaminata OLONG_015869 N 0.705
MLOC_65838 Hordeum vulgare MLOC_65838 N 0.702
ONIVA10G07150 Oryza nivara ONIVA10G07150 N 0.702
OPUNC10G06730 Oryza punctata OPUNC10G06730 N 0.702
Si029418m.g Setaria italica Si029418m.g N 0.702
GLYMA09G22110 Glycine max GLYMA09G22110 N 0.701